请问disease-symptom-cooccurrence.txt文件中各个字段分别代表什么，哪个字段是计算得到的基于症状的疾病相似性权重
20182204168 opened this issue · 5 comments
I google translated this to:
What does each field in the disease-symptom-cooccurrence.txt file represent? Which field is the calculated symptom-based disease similarity weight?
Are you asking about this portion of the README:
See
dhimmel/MEDLINEfor our MEDLINE topic extraction and cooccurrence analysis. The symptom--disease relationships are available indisease-symptom-cooccurrence.tsv.
Note that this file is produced by a different repository. See the notebook symptoms.ipynb for how that repository computes disease-symptom cooccurrence. If you still have a question, please open a new issue in that repository. English preferred.
Could you please tell me which colum in disease-symptom-cooccurrence.txt is disease–disease network based on symptom similarity?
Here's the head of disease-symptom-cooccurrence.tsv:
| doid_code | doid_name | mesh_id | mesh_name | cooccurrence | expected | enrichment | odds_ratio | p_fisher |
|---|---|---|---|---|---|---|---|---|
| DOID:10652 | Alzheimer's disease | D004314 | Down Syndrome | 800 | 35.61960058033457 | 22.459544379104482 | 39.91835215738615 | 0.0 |
| DOID:10652 | Alzheimer's disease | D008569 | Memory Disorders | 1593 | 76.58053241300478 | 20.80163129982992 | 41.88587656879804 | 0.0 |
| DOID:10652 | Alzheimer's disease | D011595 | Psychomotor Agitation | 334 | 15.235664746873008 | 21.922246619961278 | 35.277329065088274 | 0.0 |
| DOID:10652 | Alzheimer's disease | D000647 | Amnesia | 307 | 14.061215405244994 | 21.83310554260377 | 34.89009878832037 | 4.277452035e-314 |
| DOID:10652 | Alzheimer's disease | D006816 | Huntington Disease | 255 | 12.130613747774285 | 21.021195242226486 | 32.63003507014028 | 8.215868081643624e-256 |
| DOID:10652 | Alzheimer's disease | D000849 | Anomia | 115 | 3.330287859136972 | 34.53154948287314 | 77.95753484320558 | 1.3820847245462235e-147 |
| DOID:10652 | Alzheimer's disease | D007806 | Language Disorders | 198 | 18.662482688883514 | 10.609520892841369 | 12.99293205444876 | 4.33028234641986e-135 |
This file contains disease-symptom similarity. It does not contain disease–disease similarity based on symptoms. Neither the dhimmel/hsdn or dhimmel/MEDLINE repositories compute disease–disease similarity using symptoms. dhimmel/MEDLINE does compute a disease-disease-cooccurrence.tsv file based on literature cooccurrence of the diseases (not symptom similarity).
Sorry,I cannot download the file named disease-disease-cooccurrence.tsv,could you uploads the file please
I cannot download the file named disease-disease-cooccurrence.tsv,could you uploads the file please
You need to click the Download button. Here is a direct link to download the file: https://github.com/dhimmel/medline/raw/0c9e2905ccf8aae00af5217255826fe46cba3d30/data/disease-disease-cooccurrence.tsv