Pinned Repositories
cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
dhslab-docker-images
Docker images for the Spencer lab
dragenflow
nextflow-nanopore
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
nf-chicago
Pipeline for detection of DNA looping interactions in capture Hi-C data
nf-core-hic
Pipeline for Hi-C data analysis
nf-core-hicmap
3D genome contacts calling from HiC data
nf-core-rnanano
Nextflow pipeline for analysis of Nanopore RNA sequencing
nf-core-scge
Nextflow implementation of scge workflow
nf-core-wgsnano
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
Code and Software from David Spencer's lab's Repositories
dhslab/nf-core-wgsnano
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
dhslab/nf-core-hic
Pipeline for Hi-C data analysis
dhslab/dhslab-docker-images
Docker images for the Spencer lab
dhslab/cle-myeloseqhd
dhslab/cle-soma
CLE SOMA workflow
dhslab/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
dhslab/dhslab-website
David Spencer Lab website
dhslab/dragenflow
dhslab/nextflow-nanopore
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
dhslab/nf-chicago
Pipeline for detection of DNA looping interactions in capture Hi-C data
dhslab/nf-core-hicmap
3D genome contacts calling from HiC data
dhslab/nf-core-rnanano
Nextflow pipeline for analysis of Nanopore RNA sequencing
dhslab/nf-core-scge
Nextflow implementation of scge workflow
dhslab/sv_merge
Python script to merge and/or annotate SVs encoded in a VCF file
dhslab/tagbam
C program to add a tag to reads in a bam file from amplicon sequencing with an ID for each amplicon.
dhslab/wdlworkflows
Spencer lab WDL workflows for genomic analysis
dhslab/dhsrmethtools
R functions for methylation analysis