/genome-grist

map Illumina metagenomes to genomes!

Primary LanguageJupyter NotebookOtherNOASSERTION

genome-grist README

PyPI License: 3-Clause BSD

genome-grist analyzes the strain composition of microbial metagenomes using minimum metagenome covers and produces a variety of compositional and taxonomic summaries.

Check out the quick start! And please also see the rest of the docs for more information!

Example: the strain composition of a gut microbiome (iHMP)

This figure was autogenerated by genome-grist.

an example image made with genome-grist


CTB 01/22