Pinned Repositories
Augustus
Genome annotation with AUGUSTUS
awesome-emacs
A community driven list of useful Emacs packages, libraries and others.
gencode-backmap
Mapping of GENCODE gene annotation set files to older assembies
intronProspector
Identify putative introns in RNA-Seq alignments
lastz-dist
Import of lastz distribution
pipettor
robust, easy to use Python package for running Unix process pipelines
PrimerS-JuJu
Tools to assist with primer design
pycbio
pycbio
t2t-chm13-gene-analysis
T2T_cenSat_hub
T2T Centromere hub
diekhans's Repositories
diekhans/gencode-backmap
Mapping of GENCODE gene annotation set files to older assembies
diekhans/intronProspector
Identify putative introns in RNA-Seq alignments
diekhans/pycbio
pycbio
diekhans/pipettor
robust, easy to use Python package for running Unix process pipelines
diekhans/PrimerS-JuJu
Tools to assist with primer design
diekhans/t2t-chm13-gene-analysis
diekhans/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
diekhans/bioconda-recipes
Conda recipes for the bioconda channel.
diekhans/cactus
Genome aligner based upon notion of Cactus graphs
diekhans/duplicacy
A new generation cloud backup tool
diekhans/flair
Full-Length Alternative Isoform analysis of RNA
diekhans/hal
Hierarchical Alignment Format
diekhans/HPRC_Assembly_Hub
diekhans/htslib
C library for high-throughput sequencing data formats
diekhans/kent
UCSC Genome Browser source tree. Stable branch: "beta".
diekhans/lrgasp-experimental-eval
lrgasp-experimental-eval
diekhans/LyRic
Long RNA-seq analysis workflow
diekhans/miniprot
Align proteins to genomes with splicing and frameshift
diekhans/paffy
Small C/CLI library of paf format tools used by Cactus
diekhans/play
just experimenting
diekhans/pyexiftool
PyExifTool (active PyPI project) - A Python library to communicate with an instance of Phil Harvey's ExifTool command-line application. Runs one process with special -stay_open flag, and pipes data to/from. Much more efficient than running a subprocess for each command!
diekhans/pyexiftool-bug
diekhans/sonLib
Small general-purpose library for C and Python with an emphasis on bioinformatics.
diekhans/SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
diekhans/sqantiTools
Various tools to work with data from SQUANTI3
diekhans/SQLiteBioData
Build SqlLite3 database for NCBI dataset
diekhans/T2T-CHM13-hub
Assembly hub for T2T CHRM13 assemblies
diekhans/t2t-primates-hub
Hub for the T2T Primates Project
diekhans/transcript-frame-tools
Various toos to validate exon frames and CDS in gene annotation (not generally useful)
diekhans/transMap
TransMap pipeline used to build cross-species tracks for UCSC browser