Dieterich Lab
Section of Bioinformatics and Systems Cardiology at the University Hospital Heidelberg
Heidelberg, Germany
Pinned Repositories
AppleDashboard
Dashboard for analysis of Apple Watch data with interactive graphics.
Baltica
Baltica: integrated differential junction usage
CircTest
CircRNA testing and ploting R package
circtools
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
DCC
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
JACUSA
JAVA framework for accurate SNV assessment
JACUSA2
New version of JACUSA -> 2.0
medex
Intuitive Graphical User Interface for Medical Data Exploration
rp-bp
Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.
single-cell-nanopore
Workflow for Nanopore Sequencing of 10x single cell libraries
Dieterich Lab's Repositories
dieterich-lab/circtools
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
dieterich-lab/JACUSA2
New version of JACUSA -> 2.0
dieterich-lab/AppleDashboard
Dashboard for analysis of Apple Watch data with interactive graphics.
dieterich-lab/rp-bp
Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.
dieterich-lab/ASyH
The Anonymous Synthesizer for Health Data
dieterich-lab/JACUSA2helper
Auxiliary R package for assessment of JACUSA2 results
dieterich-lab/mAFiA
dieterich-lab/medex
Intuitive Graphical User Interface for Medical Data Exploration
dieterich-lab/AnonymizeAndSynthesize
Code used to produce the results presented in the publication "Anonymize or Synthesize? - Privacy-Preserving Methods for Heart Failure Score Analytics"
dieterich-lab/nmdtxdb
Shiny application and code for the database for NMD targets
dieterich-lab/QutRNA
dieterich-lab/gEAR
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
dieterich-lab/PETGUI
We present PETGUI: A user-friendly interface for training and testing a language model using Pattern-Exploiting Training (PET).
dieterich-lab/ImmunOMICS
dieterich-lab/nmd-wf
dieterich-lab/sodar-docker-compose
Setup SODAR using Docker Compose
dieterich-lab/crc1550-inf-datamanagement
dieterich-lab/cubi-isa-templates
CUBI ISA-Tab templates
dieterich-lab/ecg_data_synthesis
dieterich-lab/ecg_processing
dieterich-lab/euf-specs
Specifications of epitranscriptome unified file formats (bedRMod)
dieterich-lab/knowledge-graph-extraction-from-llms
dieterich-lab/LINDAPlus
dieterich-lab/pbiotools
Bioinformatics utilities
dieterich-lab/prRONTo
dieterich-lab/psi-co-mAFiA
dieterich-lab/pulseRTc
Our work on cardiac myocyte half lifes with a focus on transcripts / proteins
dieterich-lab/scimodom
Sci- ModoM: A quantitative database of transcriptome-wide high-throughput RNA modification sites
dieterich-lab/sodar-server
SODAR: System for Omics Data Access and Retrieval
dieterich-lab/xai-in-nlp