digitalcytometry/cytotrace2

can there have a conda env of R version

Closed this issue · 3 comments

asmlgkj commented

Thans a lot
devtools::install_github("digitalcytometry/cytotrace2", subdir = "cytotrace2_r")

make: *** [lib/R/etc/Makeconf:200: RcppExports.o] Error 1
ERROR: compilation failed for package ‘RcppGSL’

  • removing ‘lib/R/library/RcppGSL’
savagyan00 commented

Hi and thanks for using CytoTRACE 2!

We do provide a conda environment for the R package, which you can find with a conda environment file here.

To create and activate this conda environment you can follow these steps:

  • Install Miniconda if not already available.
  • (5-10 minutes) Create a conda environment with the required dependencies:
    conda env create -f environment_R.yml
  • Activate the cytotrace2 environment you just created:
    conda activate cytotrace2

Please let us know if this works out for you, and if you have any further questions!

asmlgkj commented

Thanks a lot. you helped me a lot

savagyan00 commented

Hi,
We are glad to hear our response was helpful.
Please feel free to reach out if you need further assistance or have any other questions!