SCORENADO

A customizable, user-friendly and open-source visual assessment tool for histological slides

About The Project

Structured eyeballing
Built for TMA scoring but not limited to
Proper data management
Web based application

Workflow

Create image gallery from TMA and assign unique identifier
Import image gallery
Define variable parameters
Do visual assessment
Export data

Built With

Getting Started

This is a preliminary release of Scorenado for demo purposes a full installation guide will follow with the release version. Scorenado runs on an average webserver.

Prerequisites

MySQL database
PHP
Webserver (e.g. Apache)

Installation

create user table in database

(
 	pid  int auto_increment
	 	primary key,
 	name text not null,
 	pw   text not null
)
 	engine = MyISAM
 	charset = latin1;

copy files and folders to documentRoot
update mysql config file access.inc and move to upper directory

Usage

copy the folder containing the images to score to documentRoot
set the folder name and a project description in scorenado.php
define variable parameters in scorenado.php
start scoring

Roadmap

Preliminary release of the Scorenado core app
Release version including installation instructions
Add other components (data preparation, TMA dearray, data merge etc.) of the workflow
Userinterface for setup
Zoom function

Contact

stefan reinhard - stefan.reinhard@unibe.ch

License

Distributed under the MIT License. See LICENSE for more information

digitalpathologybern/scorenado