dilie
I am a senior scientist at NYU Medical Center. Previously, I was a bioinformatics scientist at City University of New York, Hunter College.
New York University Medical CenterNew York
Pinned Repositories
p5-bpwrapper
BioPerl scripts and utilities
ASM-challenge
This is a website I build to track Salmonella outbreak using genomic data (from FASTQ to SNPs to phylogeny)
borreliabase
This is the web codebase for Lyme pathogen genomes
cov-browser
An interactive Covid genome browser
ospC-NGS
OspC amplicon sequencing pipeline for genotyping Lyme pathogens
scRNA-seq-EAE
scRNA-Seq-PKD
A collection of R/Seurat and Python Notebook scripts for analysis of single cell RNA-Seq in polycystic kidney diseases (PKD)
dilie's Repositories
dilie/ASM-challenge
This is a website I build to track Salmonella outbreak using genomic data (from FASTQ to SNPs to phylogeny)
dilie/borreliabase
This is the web codebase for Lyme pathogen genomes
dilie/cov-browser
An interactive Covid genome browser
dilie/ospC-NGS
OspC amplicon sequencing pipeline for genotyping Lyme pathogens
dilie/scRNA-seq-EAE
dilie/scRNA-Seq-PKD
A collection of R/Seurat and Python Notebook scripts for analysis of single cell RNA-Seq in polycystic kidney diseases (PKD)