divelab/DIG

Issues

• error while implementing Subgraphx

  #253 opened 2 months ago by xristos19353
  0

• About performance gap between reproduced Pronet results and the reported performance in the paper "LEARNING HIERARCHICAL PROTEIN REPRESENTATIONS VIA COMPLETE 3D GRAPH NETWORKS".

  #252 opened 3 months ago by aagdggdgggdd
  0

• ProNet scripts

  #247 opened 6 months ago by zpengmei
  1

• Issues on SubgraphX implementation on DIG

  #251 opened 3 months ago by Stika4life
  0

• TypeError: draw_networkx_nodes() got an unexpected keyword argument 'with_labels'

  #242 opened 9 months ago by derrick710
  4

• Maybe ComENet is not structure invariant?

  #250 opened 6 months ago by StefanIsSmart
  1

• Why the projector(fc1 and fc2) in graphfair don't have optimizer?How to optimize their parameters?

  #249 opened 6 months ago by Yun-Fu
  0

• Codes and scripts for ProNet

  #227 opened a year ago by twopin
  1

• cannot import name '_format_additional_forward_args' from 'captum.attr._utils.common'

  #211 opened 2 years ago by YuCheng-Qi
  2

• Unable to install DIG on windows due to pyscf

  #246 opened 7 months ago by LIAOJUNJIE-OBJ
  0

• expired url

  #245 opened 8 months ago by surqing
  0

• 'GNNExplainer' object has no attribute 'node_idx' with BA_shapes

  #243 opened 9 months ago by scottdd204
  0

• AttributeError: 'GCNConv' object has no attribute '__check_input__'

  #206 opened 2 years ago by FabioDataGeek
  6

• TypeError: Can't instantiate abstract class MarginalSubgraphDataset with abstract methods get, len

  #193 opened 2 years ago by w41039
  3

• Documentation Discrepancy: Incompatibility of DIG with PyTorch Geometric 2.3.0

  #219 opened a year ago by Qianli-Wu
  1

• edge_mask=gnnexplainer_related_preds[1][prediction], NameError: name 'prediction' is not defined

  #240 opened a year ago by scottdd204
  2

• Reconstruction loss hyperparameter

  #238 opened a year ago by nordinbelkacemi
  1

• Questions about the ComENet

  #233 opened a year ago by StefanIsSmart
  5

• Question about spherenet

  #232 opened a year ago by StefanIsSmart
  1

• when running s-mixup in DIG,we found the diffrernt results with the paper published inICML and the difference is large ,why?

  #230 opened a year ago by ZDLTH
  7

• Error on tutorial for graph generation

  #226 opened a year ago by Takaogahara
  2

• Code

  #236 opened a year ago by 11140321
  3

• Uploading my own dataset

  #235 opened a year ago by idililayda
  0

• Adding a new node feature to a Spherenet model

  #234 opened a year ago by LeonardoBarneschi
  2

• Why it is allowed to have overlap between traning and valid & test sensitive labels in Graphair?

  #229 opened a year ago by qslim
  1

• Availability of Graphair code (learning fair graph representation via automated data augmentations)

  #204 opened a year ago by nigelnnk
  3

• Graphair mini-batch version

  #215 opened a year ago by ZzoomD
  1

• xgraph

  #231 opened a year ago by DaliMIT01
  0

• TypeError: add_param_group() missing 1 required positional argument: 'param_group'

  #225 opened a year ago by langineer
  0

• RuntimeError: CUDA error: invalid device ordinal

  #224 opened a year ago by langineer
  2

• Query about GraphAug

  #223 opened a year ago by zheng-awei
  1

• Solution when alpha carbon coordinate is missing

  #221 opened a year ago by YanjingLiLi
  1

• No JSON file in DIG repo.

  #214 opened a year ago by RichardShea
  1

• .

  #220 opened a year ago by SSU02
  0

• The reproduction result on MD17 do not match

  #218 opened a year ago by xnuohz
  1

• About ProNet

  #216 opened 2 years ago by DuanhaoranCC
  0

• RuntimeError: Error(s) in loading state_dict for GnnNets: Missing key(s) in state_dict: "model.gnn_layers.0.lin.weight", "model.gnn_layers.1.lin.weight", "model.gnn_layers.2.lin.weight".

  #217 opened 2 years ago by maxheming
  0

• Training details of GearNet

  #207 opened 2 years ago by YanjingLiLi
  1

• How do I visualize molecular 3D graphs of a dataset (QM9)?

  #212 opened 2 years ago by DongfangYu-Bruce
  2

• Type of atoms

  #205 opened 2 years ago by YanjingLiLi
  6

• How to use DIG for multi-label classification tasks?

  #203 opened 2 years ago by yuancongxri
  0

• Errors in dimensions

  #194 opened 2 years ago by Breaddsmall
  4

• How can I get the vectors of the SphereNet representaions (such as the dist_emb, angle_emb, torsion_emb)

  #202 opened 2 years ago by jonejunzhang
  4

• ComENet: Confusion around optimal hyper-parameters and training procedure on Molecule3D

  #196 opened 2 years ago by fmocking
  6

• SphereNet HP tuning

  #195 opened 2 years ago by LeonardoBarneschi
  1

• SphereNet initialize atomic types tensor

  #201 opened 2 years ago by pearl-rabbit
  1

• Synthetic datasets download link expired

  #200 opened 2 years ago by XpastaX
  0

• The returned fidelity is NAN

  #199 opened 2 years ago by TimelessXZY
  1

• `__call__` of `SubgraphX` returns List instead of `MCTSNode`

  #198 opened 2 years ago by Michael1015198808
  0

• The results do not match the description in Readme.md

  #197 opened 2 years ago by huayangcs
  0