djlee1

Pinned Repositories

awesome-segment-anything
Tracking and collecting papers/projects/others related to Segment Anything.
00
cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Language:Python00
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Language:HTML00
COVIDseq_to_peptide
Convert consensus genome to peptide sequence
Language:Shell01
QuantSeq-3-mRNA-FWD-pipeline
Language:Python00
scanpy
Single-cell analysis in Python. Scales to >1M cells.
Language:Python00
squidpy
Spatial Single Cell Analysis in Python
Language:Python0 0 00
streamlit-img-label
streamlit-img-label is a graphical image annotation tool using streamlit. Annotations are saved as XML files in PASCAL VOC format.
Language:Python00
Education_BulkRNAseq
processing bulk RNAseq
Language:HTML20
IAMSAM
This is a repository of IAMSAM, an image-based ST analysis tool
Language:Jupyter Notebook16 3 01

djlee1's Repositories

djlee1/awesome-segment-anything
Tracking and collecting papers/projects/others related to Segment Anything.
00
djlee1/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Language:Python00
djlee1/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Language:HTML00
djlee1/COVIDseq_to_peptide
Convert consensus genome to peptide sequence
Language:Shell01
djlee1/QuantSeq-3-mRNA-FWD-pipeline
Language:Python00
djlee1/scanpy
Single-cell analysis in Python. Scales to >1M cells.
Language:Python00
djlee1/squidpy
Spatial Single Cell Analysis in Python
Language:Python0 0 00
djlee1/streamlit-img-label
streamlit-img-label is a graphical image annotation tool using streamlit. Annotations are saved as XML files in PASCAL VOC format.
Language:Python00