Pinned Repositories
awesome-segment-anything
Tracking and collecting papers/projects/others related to Segment Anything.
cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
COVIDseq_to_peptide
Convert consensus genome to peptide sequence
QuantSeq-3-mRNA-FWD-pipeline
squidpy
Spatial Single Cell Analysis in Python
awesome-segment-anything
Tracking and collecting papers/projects/others related to Segment Anything.
Education_BulkRNAseq
processing bulk RNAseq
IAMSAM
This is a repository of IAMSAM, an image-based ST analysis tool
squidpy
Spatial Single Cell Analysis in Python
djlee1's Repositories
djlee1/awesome-segment-anything
Tracking and collecting papers/projects/others related to Segment Anything.
djlee1/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
djlee1/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
djlee1/COVIDseq_to_peptide
Convert consensus genome to peptide sequence
djlee1/QuantSeq-3-mRNA-FWD-pipeline
djlee1/squidpy
Spatial Single Cell Analysis in Python