Pinned Repositories
flowgatenist
NIST-LMSF
Software for running top-level automation control scripts
culture_reproducibility
Data and analysis code for manuscript: "Method for reproducible automated bacterial cell culture and measurement"
gsf_ims_fitness
Python package and Jupyter notebooks used for analysis of sequencing data for NIST LacI landscape analysis
nist_lacI_landscape_analysis
Starting point and instructions for software used for analysis of the NIST lacI landscape dataset
NISTBartender
DNA barcode parsing, clustering, and sorting
bartender-1.1
This bartender version could handle arbitrary length of barcode
lantern
Interpretable genotype-phenotype landscape modeling
lantern-webui
Streamlit UI for training LANTERN machine learning model.
ligafy_flow_analysis_git_repo
data analysis for Ligafy manuscript
djross22's Repositories
djross22/lantern-webui
Streamlit UI for training LANTERN machine learning model.
djross22/NIST-LMSF
Software for running top-level automation control scripts
djross22/lmsf_scripts
Script files for automation methods at the NIST Living Measurement Systems Foundry
djross22/lmsf_hamilton
Hamilton methods used at the NIST Living Measurement Systems Foundry
djross22/gsf_ims_fitness
Python package and Jupyter notebooks used for analysis of sequencing data for NIST LacI landscape analysis
djross22/flowgatenist
djross22/long-read-snakemake
Snakemake pipeline for long-read sequencing analysis for DMS data
djross22/ligafy_flow_analysis_git_repo
data analysis for Ligafy manuscript
djross22/NISTBartender
DNA barcode parsing, clustering, and sorting
djross22/bartender-1.1
This bartender version could handle arbitrary length of barcode
djross22/lantern
Interpretable genotype-phenotype landscape modeling
djross22/verify_sanger
Automated Sanger sequencing analysis to verify constructs
djross22/culture_reproducibility
Data and analysis code for manuscript: "Method for reproducible automated bacterial cell culture and measurement"
djross22/pySBOL3
Native python implementation of SBOL 3.0 specification
djross22/nist_lacI_landscape_analysis
Starting point and instructions for software used for analysis of the NIST lacI landscape dataset