dkoppstein
Junior Group Leader for Cancer Bioinformatics and Multiomics at the DKTK/DKFZ and Uniklinikum Düsseldorf
DKTK/DKFZDüsseldorf, DE
Pinned Repositories
2017-07-03-advancedrresbaz
apa_target_caller
APA target caller - derived from the exar2020 paper
automount_viz
CIAtranscriptome_assembly
data-science-for-bioinfo
A collection of resources for data scientists (not only) in bioinformatics
fantavier
Awesome SV analysis pipeline
influenza-analysis
Workflow for analysing influenza viral 5' end sequencing data.
isoform-coevolution
ngsschool-snakemake-tutorial
Snakemake Tutorial for NGSSchool.
nmo-visium-analysis
dkoppstein's Repositories
dkoppstein/ngsschool-snakemake-tutorial
Snakemake Tutorial for NGSSchool.
dkoppstein/data-science-for-bioinfo
A collection of resources for data scientists (not only) in bioinformatics
dkoppstein/influenza-analysis
Workflow for analysing influenza viral 5' end sequencing data.
dkoppstein/apa_target_caller
APA target caller - derived from the exar2020 paper
dkoppstein/automount_viz
dkoppstein/bioconda-recipes
Conda recipes for the bioconda channel.
dkoppstein/CIAtranscriptome_assembly
dkoppstein/fantavier
Awesome SV analysis pipeline
dkoppstein/isoform-coevolution
dkoppstein/nmo-visium-analysis
dkoppstein/Baltica
Baltica: integrated differential junction usage
dkoppstein/cnvkit
Copy number variant detection from targeted DNA sequencing
dkoppstein/davidkoppstein-comments
dkoppstein/dkoppstein-resume
My resume.
dkoppstein/dkoppstein.github.io
Personal Webpage
dkoppstein/nanoporeReads_dataTransfer
A pipeline to transfer the Nanopore reads to end users
dkoppstein/nikola
A static website and blog generator
dkoppstein/Obsidian_to_Anki
Script to add flashcards from text/markdown files to Anki
dkoppstein/odcf-lsf
Snakemake profile for running jobs on an LSF cluster
dkoppstein/pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
dkoppstein/Pore-C-Snakemake
dkoppstein/rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
dkoppstein/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
dkoppstein/rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
dkoppstein/sample-sheet
A permissively licensed library designed to replace Illumina's Experiment Manager
dkoppstein/SampleSheet
Create an Illumina Sample Sheet, the comma-separated text document required by Illumina sequencing systems to specify (1) sequencing parameters and (2) sample-barcode relationships. Customize [Header], [Reads], and [Data] sections; in particular, draw on up to 192 8-bp barcodes (96x i7 & 96x i5 indices) to specify up to 9,216 sample-barcode relationships for multiplexed amplicon sequencing.
dkoppstein/small-rna-seq-pipeline
A pipeline to annotate miRNAs, phased siRNAs and other types using a reference genome and experimental sRNA-Seq data
dkoppstein/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
dkoppstein/snakemake-interface-executor-plugins
This package provides a stable interface for interactions between Snakemake and its executor plugins.
dkoppstein/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets