dktanwar/urpp_docker

Docker image to maintain the code I would use for the data analysis

Working with this Docker contaier

Building the image locally

1. Clone the repo locally

git clone https://github.com/dktanwar/urpp_docker.git

2. Enter into directory

cd urpp_docker

3. Build image locally and call it as bsseq

docker build . -t bsseq

Entering into container and running analysis

1. Enter into container while mounting directory

docker run --rm -it --entrypoint /bin/bash -v /mnt/:/home/rstudio bsseq 

You are mounting /mnt/ of your computer to /home/rstudio of container

2. Go to the mounted place

cd /home/rstudio

Here, you would see the content of /mnt/ of your computer

3. Make a project directory somewhere on /home/rstudio/where/you/want

cd /home/rstudio/where/you/want
create_project myProject
cd myProject

4. Run your analysis Here, you would see the structure from dktanwar/project_structure

Running Rstudio server

docker run --rm -p 8780:8787 -e PASSWORD=pass bsseq

Also, mouning a directory

docker run --rm -p 8780:8787 -e PASSWORD=pass -v /mnt/:/home/rstudio bsseq

Running shiny server

docker run -p 3838:3838 --rm bsseq /usr/bin/shiny-server