Pinned Repositories
bankers2
A set of tools to create plotting files from subset counts in banker's sequenc order. I.e. helper scripts for the visualisation of count data across all possible subsets of a sample set.
bcftools
This is my own personal development repository for BCFtools. Check out the main repository at: https://github.com/samtools/bcftools
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
cargo
The Rust package manager
rna-seq-kallisto-sleuth
A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.
TutMinicondaSnakemake
dlaehnemann's Repositories
dlaehnemann/TutMinicondaSnakemake
dlaehnemann/bankers2
A set of tools to create plotting files from subset counts in banker's sequenc order. I.e. helper scripts for the visualisation of count data across all possible subsets of a sample set.
dlaehnemann/bcftools
This is my own personal development repository for BCFtools. Check out the main repository at: https://github.com/samtools/bcftools
dlaehnemann/bioconda-utils
Utilities for building and managing bioconda recipes
dlaehnemann/cargo
The Rust package manager
dlaehnemann/ggplot2_Intro
A quick introduction into ggplot2, with ioslides produced from Rmarkdown
dlaehnemann/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
dlaehnemann/htslib
C library for high-throughput sequencing data formats
dlaehnemann/jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
dlaehnemann/r-color-palettes
Comprehensive list of color palettes available in r
dlaehnemann/rust-feedstock
A conda-smithy repository for rust.
dlaehnemann/SCcaller
Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
dlaehnemann/setup_sra_runs
collection of scripts for downloading, extracting and setting up SRA data for a pipeline
dlaehnemann/sustainable_software_development_tools
a collection of tools and recommendations for sustainable software development
dlaehnemann/Tut_R_TidyData
R tidyverse packages in Rstudio -- a short tutorial