R data package for IA-SVA
This R package includes various data examples for IA-SVA: Lee et. al. (2018). All data simulation code and results used in the manuscript are publicly available at iasvaExample website.
Installation
To install this package, start R and enter the following commands:
library(devtools)
devtools::install_github("dleelab/iasvaExamples")
Load the package
To load this package, enter the following command to the R console:
library(iasvaExamples)
Data List
Lawlor et. al. (2016)
Human Islet single cell RNA-seq data fromLawlor_Islet_scRNAseq_Read_Counts: Gene-level read counts
Lawlor_Islet_scRNAseq_Annotations: Annotations describing the islet samples and experimental settings
Usage:
data("Lawlor_Islet_scRNAseq_Read_Counts")
data("Lawlor_Islet_scRNAseq_Annotations")
Darmanis et. al. (2015)
Human Brain single cell RNA-seq data fromDarmanis_Brain_scRNAseq_Read_Counts: Gene-level read counts
Darmanis_Brain_scRNAseq_Annotations: Annotations describing the brain samples and experimental settings
Usage:
data("Darmanis_Brain_scRNAseq_Read_Counts")
data("Darmanis_Brain_scRNAseq_Annotations")
Xin et. al. (2016)
Human Islet single cell RNA-seq data fromXin_Islet_scRNAseq_Read_Counts: Gene-level read counts
Xin_Islet_scRNAseq_Annotations: Annotations describing the islet samples and experimental settings
Usage:
data("Xin_Islet_scRNAseq_Read_Counts")
data("Xin_Islet_scRNAseq_Annotations")