dmattek

Computational biologist, data analyst, scientific programmer, modeller.

University of BernBern, Switzerland

Pinned Repositories

ARCOS
An R package to detect collective spatio-temporal phenomena
Language:R10 2 13
ARCOS-tutorial
A Jupyter notebook to identify collective cell signalling in raw microscopy images
Language:Jupyter Notebook10
BernR-semi-advanced
Semi-advanced R topics
0 1 00
cell-cycle-1d
Interactive cell cycle analysis
Language:R1 0 00
dzPlateViewer
Deep Zoom Plate Viewer for microscopy images
Language:JavaScript15 2 02
dzPosters
Deep Zoom Poster Viewer
Language:JavaScript1 1 00
screenQC
Interactive visualisation of quantitative concepts in high-content screening
Language:R2 1 01
shiny-freeclust
Language:R1 0 01
shiny-scholar-navi
R/Shiny app to browse and visualise Google Scholar data
Language:R1 1 00
shiny-timecourse-inspector
An R/Shiny web app for visualisation, analysis and clustering of time-series.
Language:R4 1 22

dmattek's Repositories

dmattek/dzPlateViewer
Deep Zoom Plate Viewer for microscopy images
Language:JavaScript15 2 02
dmattek/ARCOS
An R package to detect collective spatio-temporal phenomena
Language:R10 2 13
dmattek/shiny-timecourse-inspector
An R/Shiny web app for visualisation, analysis and clustering of time-series.
Language:R4 1 22
dmattek/screenQC
Interactive visualisation of quantitative concepts in high-content screening
Language:R2 1 01
dmattek/ARCOS-tutorial
A Jupyter notebook to identify collective cell signalling in raw microscopy images
Language:Jupyter Notebook10
dmattek/cell-cycle-1d
Interactive cell cycle analysis
Language:R1 0 00
dmattek/dzPosters
Deep Zoom Poster Viewer
Language:JavaScript1 1 00
dmattek/shiny-freeclust
Language:R1 0 01
dmattek/shiny-scholar-navi
R/Shiny app to browse and visualise Google Scholar data
Language:R1 1 00
dmattek/BernR-semi-advanced
Semi-advanced R topics
0 1 00
dmattek/BernR-shinyBasics
Language:R0 1 00
dmattek/burst-calc
Language:HTML0 0 01
dmattek/cellprofiler-batch
Language:Shell0 0
dmattek/channel-sort
Language:Shell0 0
dmattek/coralie-sirnascreen
Language:R0 0
dmattek/COVID19
Language:HTML1 0
dmattek/CrashCourse-stats
Crash course in basic concepts of statistics
Language:R1 0
dmattek/GenerativeMusic
Procedurally generated musical compositions.
Language:Swift0 0
dmattek/hcs-package
Language:R0 0
dmattek/ilastik-batch
Language:Shell1 0
dmattek/lap-track
Language:MATLAB0 0
dmattek/NEUBIAS-2023-Group6-CARE
1 0
dmattek/Paolo-MCF10A-timelapse
Language:R1 0
dmattek/pi-enviro-meas
Language:HTML1 0
dmattek/singularity-defs
Language:Shell0 0
dmattek/site-build
Build script and documents for the OpenSeadragon site
Language:JavaScript0 0
dmattek/SwissBIAS.github.io
Website for the SwissBIAS network: Swiss BioImage Analysts' network
Language:JavaScript0 0
dmattek/tca-package
Language:R1 0
dmattek/training-MIC20200319
Language:HTML1 01
dmattek/workshop-QUANTBIO2019
Language:HTML1 0