Pinned Repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
bedtools2
A powerful toolset for genome arithmetic.
calibre
The official source code repository for the calibre ebook manager
CNPBayes
Bayesian mixture model for estimating copy number polymorphisms
cpython
The Python programming language
django-simple-history
Store model history and view/revert changes from admin site.
EPACTS
gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
dmckean's Repositories
dmckean/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
dmckean/bedtools2
A powerful toolset for genome arithmetic.
dmckean/calibre
The official source code repository for the calibre ebook manager
dmckean/CNPBayes
Bayesian mixture model for estimating copy number polymorphisms
dmckean/cpython
The Python programming language
dmckean/django-simple-history
Store model history and view/revert changes from admin site.
dmckean/EPACTS
dmckean/gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
dmckean/hts-nim
nim wrapper for htslib for parsing genomics data files
dmckean/htslib
C library for high-throughput sequencing data formats
dmckean/jellyfish
a python library for doing approximate and phonetic matching of strings.
dmckean/libdeflate
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression
dmckean/peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
dmckean/phase
Code and tests for the phase software
dmckean/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
dmckean/smoove
structural variant calling and genotyping with existing tools, but, smoothly.