Simple awk script to transfer properties indexed by amino acid type to the Bfactor column of the pdb file. Use to generate coordinates that can be colored by B-factor in PyMol to display the distribution of some property (e.g. hydrophobicity, or whatever).
Handles 1 or 3-letter AA code, does simple error checking.
Input 1 - white space separated amino acid / property pairs; can have a single line header description.
Input 2 - pdb file to modify
Usage -
./property_to_Bfac.awk values_table.txt input.pdb > output.pdb