dmis-lab/biobert-pytorch

Issues

• transformers version 3.0.0 installaion failing with Rust lang 1.73.0.

  #44 opened a year ago by junaruga
  1

• Evaluating trained NER model

  #45 opened 3 months ago by aclarkse
  0

• train_dev.tsv in datasets

  #38 opened 2 years ago by jinniulema
  1

• Performing RE on new text

  #30 opened 3 years ago by ChrisPaneque
  6

• How can I use BioBERT for Relation extraction and further finding the effective entities in a sentence?

  #17 opened 4 years ago by Meghna-Goyal
  3

• KeyError: 'label'

  #43 opened a year ago by Ahenenerbe
  1

• TypeError: TextInputSequence must be str

  #42 opened a year ago by Wangrulin-1128
  2

• AttributeError: 'Trainer' object has no attribute 'is_world_master' while fine tuning BioBERT-PyTorch on my custom data set

  #7 opened 4 years ago by abhibisht89
  5

• Empty dev.tsv files in the GAD dataset after download

  #41 opened a year ago by MaxwellWibert
  2

• How to set the parameter of the biobert

  #39 opened 2 years ago by 201720502wrl
  0

• Hellow,auther. The Web link of "download dataset" is out of data. Could you updata it? Thanks!

  #37 opened 2 years ago by MrLiuCC
  2

• Generating Embeddings for Unknown Text

  #36 opened 2 years ago by shivin9
  0

• The "convert squad examples" is stuck on new data

  #35 opened 2 years ago by r3dapple
  0

• The dataset download doesnt work anymore

  #34 opened 2 years ago by r3dapple
  1

• How to get embedding without deleting duplicates？

  #33 opened 2 years ago by WangyuchenCS
  3

• How to run chemprot relation classification?

  #29 opened 3 years ago by arunpatala
  2

• Base models work, but large model doesn't detect any entity

  #32 opened 2 years ago by rafsanahmed
  0

• Running BioBERT on superGLUE tasks?

  #19 opened 2 years ago by shi-kejian
  1

• BC2GM NER result

  #25 opened 3 years ago by FreeRotate
  1

• Running NER

  #31 opened 2 years ago by SatanuG
  4

• Is there any plan to add processor for QA of type list?

  #18 opened 3 years ago by ibrahimishag
  0

• Running Gene-Gene Relation Extraction task [Please I need help urgently!!!!]

  #27 opened 3 years ago by clemEssien
  0

• UnboundLocalError: local variable 'initialized_variable_names' referenced before assignment in run_ner.py

  #28 opened 3 years ago by gvalchca
  0

• GlueDataset & GlueDataTrainingArguments - working on Colab

  #11 opened 4 years ago by LedaguenelArthur
  4

• syntax error when running the bash script for cv

  #4 opened 4 years ago by mmmddd98
  3

• The model cannot be loaded offline.And I found the problem and gave the solution.

  #26 opened 3 years ago by aa429879269
  0

• dmis-lab/biobert-base-cased-v1.1 Tokenizer lower cases the input

  #24 opened 3 years ago by suamin
  0

• Help !

  #23 opened 3 years ago by HuangDaohong
  0

• Predictions in raw data

  #5 opened 4 years ago by GuillermoJaca
  6

• NER results

  #15 opened 4 years ago by ibrahimishag
  1

• How to use the biobert in a multi-label classification task?

  #3 opened 4 years ago by yangxia605
  1

• Some problems about Fine-tuning Biobert

  #1 opened 4 years ago by Peter857
  2

• Converting BioBERT version link

  #10 opened 4 years ago by JeffT13
  1

• How run on GPU?

  #2 opened 4 years ago by zhaoxiongjun
  1

• can't run QA with albert

  #14 opened 4 years ago by abdallah197
  0

• Error when running evaluation on BioASQ 4-6b datasets

  #13 opened 4 years ago by abdallah197
  0

• Broken link for PyTorch conversion steps

  #6 opened 4 years ago by mgavish
  1