Pinned Repositories
bioio
Micro-libraries for reading and writing genomic sequence data in various formats.
desert-latex
Ultra-modern feature-packed LaTeX 3 class for dissertations and reports
mandos
Fetch pharmacological knowledge on chemical compounds and squeeze it into semantic triples. For analysis of chemical screens and training and evaluation of algorithms.
pocketutils
Everyday pocket-sized Python functions for you to copy or import.
realized
Human-readable string serializations for many data types
science-notebook-template
🧪 A simple, elegant template for repositories with Jupyter notebooks supporting publications.
suretime
Get IANA timezones and fully resolved timestamps, even on Windows.
typed-dfs
Make Pandas DataFrames enforce definitions, self-organize, and correctly serialize in 18 formats.
tyrannosaurus
Generate beautifully modern (2021+) Python projects with seamless, GitHub-based CI/CD, Docker and Conda support, and out-of-the-box integration with >30 best-practices tools and standards.
dmyersturnbull's Repositories
dmyersturnbull/tyrannosaurus
Generate beautifully modern (2021+) Python projects with seamless, GitHub-based CI/CD, Docker and Conda support, and out-of-the-box integration with >30 best-practices tools and standards.
dmyersturnbull/science-notebook-template
🧪 A simple, elegant template for repositories with Jupyter notebooks supporting publications.
dmyersturnbull/typed-dfs
Make Pandas DataFrames enforce definitions, self-organize, and correctly serialize in 18 formats.
dmyersturnbull/mandos
Fetch pharmacological knowledge on chemical compounds and squeeze it into semantic triples. For analysis of chemical screens and training and evaluation of algorithms.
dmyersturnbull/bioio
Micro-libraries for reading and writing genomic sequence data in various formats.
dmyersturnbull/suretime
Get IANA timezones and fully resolved timestamps, even on Windows.
dmyersturnbull/pocketutils
Everyday pocket-sized Python functions for you to copy or import.
dmyersturnbull/service-it
Turn any Python function into a daemon that listens on a socket or port.
dmyersturnbull/smartio
Python IO atomicity, temp files, checksums, and gz/zip/bz2/brotli/lz4/zstd compression
dmyersturnbull/realized
Human-readable string serializations for many data types
dmyersturnbull/augustus
An open source re-implementation of Caesar III
dmyersturnbull/backend-test
FastAPI + PostgreSQL + polars + docker compose example
dmyersturnbull/biojava
BioJava is an open-source project dedicated to providing a Java framework for processing biological data.
dmyersturnbull/biozernike
Protein structure descriptors and alignment based on 3D Zernike moments.
dmyersturnbull/cicd
CI/CD example
dmyersturnbull/clana
CLANA is a toolkit for classifier analysis.
dmyersturnbull/commitizen
Create committing rules for projects :rocket: auto bump versions :arrow_up: and auto changelog generation :open_file_folder:
dmyersturnbull/commitizen-action
Commitizen github action to bump and create changelog
dmyersturnbull/dmyersturnbull.github.io
Gaslit by a computer (in Hugo)
dmyersturnbull/fastapi-sso
FastAPI plugin to enable SSO to most common providers (such as Facebook login, Google login and login via Microsoft Office 365 Account)
dmyersturnbull/flake8-copyright
Adds copyright checks to flake8
dmyersturnbull/hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
dmyersturnbull/network-merge
Annotates edges with a rudimentary score and collapses cliques that consist of interologs.
dmyersturnbull/pippin
Common Scala libraries.
dmyersturnbull/protodomain-search
Search for subunits of tertiary psuedosymmetry that occur throughout fold space
dmyersturnbull/rd_filters
A script to run structural alerts using the RDKit and ChEMBL
dmyersturnbull/symmetry
Detect, analyze, and visualize protein symmetry
dmyersturnbull/thornless
Safe, fast math eval.
dmyersturnbull/useful_rdkit_utils
Some useful RDKit functions
dmyersturnbull/whatthegist
Code that could have been GitHub gists instead.