Phage Proteomic Tree
This is a repository for all of my scripts associated with building the phage proteomic tree -- the overwhelming majority of which are from Rob's rundown, found here.
Helpful directory structure for the analysis:
lrwxrwxrwx 1 dnasko wommack 31 Nov 29 2014 00-sequences -> ../serc_build_0.1/00-sequences/
lrwxrwxrwx 1 dnasko wommack 28 Nov 29 2014 01-blastp -> ../serc_build_0.1/01-blastp/
drwxr-xr-x 2 dnasko wommack 3497984 Nov 29 2014 02-blast_split
drwxr-xr-x 2 dnasko wommack 88 Dec 1 2014 03-id_map
drwxr-xr-x 2 dnasko wommack 3235840 Nov 30 2014 04a-dnd
drwxr-xr-x 2 dnasko wommack 4603904 Nov 30 2014 04-clustalw
drwxr-xr-x 2 dnasko wommack 4599808 Dec 1 2014 05a-rerun_protdist
drwxr-xr-x 2 dnasko wommack 4591616 Dec 1 2014 05b-RErerun_protdist
drwxr-xr-x 2 dnasko wommack 4599808 Dec 1 2014 05-protdist
drwxr-xr-x 2 dnasko wommack 94 Dec 2 2014 06-matrix
drwxr-xr-x 2 dnasko wommack 86 Dec 2 2014 07-neighbor
drwxr-xr-x 2 dnasko wommack 56 Dec 2 2014 08-tree
lrwxrwxrwx 1 dnasko wommack 26 Nov 29 2014 scripts -> ../serc_build_0.1/scripts/