Pinned Repositories
CellPath
Connectome
gtfparse
Parsing tools for GTF (gene transfer format) files
liana-py
LIANA: a LIgand-receptor ANalysis frAmework
NICHES
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
rtd-tutorial
SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
squidpy
Spatial Single Cell Analysis in Python
dnjst's Repositories
dnjst/CellPath
dnjst/Connectome
dnjst/gtfparse
Parsing tools for GTF (gene transfer format) files
dnjst/liana-py
LIANA: a LIgand-receptor ANalysis frAmework
dnjst/NICHES
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
dnjst/pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
dnjst/rtd-tutorial
dnjst/SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
dnjst/SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
dnjst/squidpy
Spatial Single Cell Analysis in Python
dnjst/ViennaCCCdb