dnkennedy
I am a Professor of Psychiatry and Radiology at the University of Massachusetts Chan Medical School.
University of Massachusetts Medical SchoolWorcester, MA
Pinned Repositories
ABCDfetch
Some tools for local fetching ABCD data for local processing
brainhack-boston.github.io
Brainhack Boston
CA_tarining
CloudComputeExample
A repo for an example S3 to EC2 container processing with export back to S3 using 'efficient' local job handling.
demo-protocol
an example protocol which serves as default protocol in schema-ui
ds001907-EDU
Fork of the original OpenNeuro dataset, in order to make proper BIDS for the ReproNim/OHBM 2022 Educational course.
ENIGMA-FreeSurfer-protocol
These protocols are for the analysis of subcortical volume, and cortical thickness and surface area data within FreeSurfer ROI's for ENIGMA working groups.
hackathon2021
Website for the 2021 OHBM Hackathon
handbook
Princeton Handbook for Reproducible Neuroimaging
heudiconv-joss-paper
Repository to prepare HeuDiConv paper
dnkennedy's Repositories
dnkennedy/ABCDfetch
Some tools for local fetching ABCD data for local processing
dnkennedy/CloudComputeExample
A repo for an example S3 to EC2 container processing with export back to S3 using 'efficient' local job handling.
dnkennedy/brainhack-boston.github.io
Brainhack Boston
dnkennedy/CA_tarining
dnkennedy/demo-protocol
an example protocol which serves as default protocol in schema-ui
dnkennedy/ds001907-EDU
Fork of the original OpenNeuro dataset, in order to make proper BIDS for the ReproNim/OHBM 2022 Educational course.
dnkennedy/ENIGMA-FreeSurfer-protocol
These protocols are for the analysis of subcortical volume, and cortical thickness and surface area data within FreeSurfer ROI's for ENIGMA working groups.
dnkennedy/hackathon2021
Website for the 2021 OHBM Hackathon
dnkennedy/handbook
Princeton Handbook for Reproducible Neuroimaging
dnkennedy/heudiconv-joss-paper
Repository to prepare HeuDiConv paper
dnkennedy/HowWouldReproNim
Sphinx test for rendering the "How Would ReproNim Do That?" series of documents
dnkennedy/labelbuddy-annotations
Annotations of academic papers. The papers were likely gathered using pubget, and the annotations made with labelbuddy
dnkennedy/module-intro
Module i: An Introduction to Reproducible Neuroimaging training module
dnkennedy/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
dnkennedy/neurolinks
Links to Neuroscience tools, portals, initiatives, and more!
dnkennedy/nidm-local-terms
Created for NIDM document local term definitions
dnkennedy/nidm-specs
Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance
dnkennedy/NiMARE
Coordinate- and Image-based meta-analysis in Python
dnkennedy/ohbm-aperture.github.io
Website for the OHBM Aperture Initiative
dnkennedy/ohbm2020-posters
Centralized registry of Jitsi rooms for OHBM 2020 posters.
dnkennedy/OHBMEducation-2022
Repo for the OHBM Education 1/2 day course entitled: "How to Write a Re-Executable Publication"
dnkennedy/projects
dnkennedy/ReproNim-reprokwyk
dnkennedy/repronim.github.io
dnkennedy/reprorehab2022
dnkennedy/SchizBull_HC
dnkennedy/simple_workflow
dnkennedy/SimpleAssessment
dnkennedy/SocialSync_Power
dnkennedy/tutorials-and-resources
A list of tutorials and other resources useful to learn open science and neuroimaging