dohalloran/Bio-SeqFeature-Generic-Ext-PrimerMap

extends Bio::SeqFeature::Generic class to generate a PrimerMap

Bio-SeqFeature-Generic-Ext-PrimerMap version 1.3

Author: Damien O'Halloran, The George Washington University, 2016

Installation

1. Download and extract the Bio-SeqFeature-Generic-Ext-PrimerMap.zip file
   tar -xzvf Bio-SeqFeature-Generic-Ext-PrimerMap.zip
2. The extracted dir will be called Bio-SeqFeature-Generic-Ext-PrimerMap

   cd Bio-SeqFeature-Generic-Ext-PrimerMap   
   perl Makefile.PL  
   make  
   make test  
   make install  

Usage

Run as follows:

   my $tmp = PrimerMap->new();  
   
   $tmp->load_map(  
    primer_start => $start,  
    primer_end   => $end,  
    seq_length   => "1200",  
    gene_name    => "myGene",  
    out_file     => $output || "output.png"  
    );    

Contributing

All contributions are welcome.

Support

If you have any problem or suggestion please open an issue here.

License

GNU GENERAL PUBLIC LICENSE