GENIE heritability using LDSC

LDSC (LD SCore) v1.0.1 was used for estimating heritability.

More information on LDSC can be found here: https://github.com/bulik/ldsc

convert_plato_output

Contains script to convert plato (https://ritchielab.org/plato) output to LDSC input format.

The other directories have shell scripts that show the exact ldsc commands used to estimate heritability.

PCA directory

Contains scripts used to impute missing phenotypes and run PCA analysis.