Pinned Repositories
basics_metagenomics
My tutorials for the course Basics in Metagenomics 2019
bioconda-recipes
Conda recipes for the bioconda channel.
boreal_lakes
coderefinery
Code refinery workshop
coursera-ibm-adsc
coursera-ibm-applied-data-science-capstone
covtype_dashboard
Streamlit dashboard for data exploration of the covtype dataset
mapping-by-sequencing
Mapping by sequencing pipeline
thaw_ponds_data_analysis
Data analysis for thaw ponds carbon degradation paper
MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
MToolBox_snakemake
MToolBox pipeline written in snakemake to allow a better scalability
domenico-simone's Repositories
domenico-simone/basics_metagenomics
My tutorials for the course Basics in Metagenomics 2019
domenico-simone/bioconda-recipes
Conda recipes for the bioconda channel.
domenico-simone/boreal_lakes
domenico-simone/coursera-ibm-adsc
coursera-ibm-applied-data-science-capstone
domenico-simone/covtype_dashboard
Streamlit dashboard for data exploration of the covtype dataset
domenico-simone/mapping-by-sequencing
Mapping by sequencing pipeline
domenico-simone/data
domenico-simone/databricks-test
domenico-simone/deep-metaviriomes
domenico-simone/demultiplex_pacbio
domenico-simone/domenico-simone.github.io
domenico-simone/gittt
domenico-simone/jbrowse
A modern genome browser built with JavaScript and HTML5.
domenico-simone/jbrowse_mini
domenico-simone/jbrowse_mini_test
Test for jbrowse_mini
domenico-simone/metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
domenico-simone/planets
git tutorial
domenico-simone/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
domenico-simone/rmlst_api
Run rmlst API through python script
domenico-simone/simple_sm_workflow
A simple snakemake workflow to be packaged with bioconda
domenico-simone/SLUBI_training_brodde
domenico-simone/sm_wf
domenico-simone/TE_Biogas
domenico-simone/test-cli-dk
domenico-simone/test_220309
domenico-simone/test_snakemake7_cluster
domenico-simone/thekopsora_jbrowse
jbrowse repo for Thekopsora genome
domenico-simone/tutorials
:books: Various bioinformatics tutorials
domenico-simone/valore_dev
domenico-simone/website_traffic_analysis