question on gcContent and mappability set to zero, mosaics::.processBin_MGC
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jamesdalg commented
If I might ask, are there certain types of files that will only give GC content and mappability information? Is this a bam only feature? I can't get access to the sourcecode for processBin_MGC to tell.
jamesdalg commented
bins<-readBins(type = c("chip","input"),fileName =c(constructedbins_input_files[1],constructedbins_chip_files[1]),parallel=T,nCore=detectCores())
Use 'parallel' package for parallel computing.
Info: reading and preprocessing bin-level data...
Info: data contains more than one chromosome.
Info: done!
bins@gcContent
numeric(0)