pathclust
pathclust: Pathway-guided identification of cancer subtypes
pathclust is a statistical approach to improve prediction of cancer subgroups and identification of key genes and pathways by integrating information from biological pathway databases.
Installation
To install the development version of pathclust, it's easiest to use the 'devtools' package.
#install.packages("devtools")
library(devtools)
install_github("dongjunchung/pathclust")
Usage
The R package vignette will provide a good start point for the genetic analysis using pathclust package, including the overview of pathclust package and the example command lines:
library(pathclust)
vignette("pathclust-example")