Pinned Repositories
AdminLTE
Pi-hole Dashboard for stats and more
amplicon_coverage_plot
interactive barplot for amplicon sequencing
ATEM-Loader
Script to pull slides from a source, like Google Slides, and load them into predefined slots in an ATEM video switcher
bamclipper
Remove primer sequence from BAM alignments by soft-clipping
barcoding
Naïve barcode deconvolution for amplicons
BBTools-ARM
Bio-EUtilities
Low-level OO Perl interface for NCBI's eutils
BIO_scripts
Various scripts
brewcompetitiononlineentry
cutadapt-parallel
wrapper for cutadapt to parallelize it and make it faster
donutbrew's Repositories
donutbrew/AdminLTE
Pi-hole Dashboard for stats and more
donutbrew/amplicon_coverage_plot
interactive barplot for amplicon sequencing
donutbrew/ATEM-Loader
Script to pull slides from a source, like Google Slides, and load them into predefined slots in an ATEM video switcher
donutbrew/bamclipper
Remove primer sequence from BAM alignments by soft-clipping
donutbrew/barcoding
Naïve barcode deconvolution for amplicons
donutbrew/BBTools-ARM
donutbrew/Bio-EUtilities
Low-level OO Perl interface for NCBI's eutils
donutbrew/BIO_scripts
Various scripts
donutbrew/brewcompetitiononlineentry
donutbrew/cutadapt-parallel
wrapper for cutadapt to parallelize it and make it faster
donutbrew/DynSilo
Perl script to keep your Name Silo domain record in sync with your IP address
donutbrew/EDGE
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
donutbrew/fixsuperior
Website
donutbrew/flash
donutbrew/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
donutbrew/picframe_colepd
A WiFi picture frame allowing for remote photo uploads, using an ESP32-C3 and a 5.6" color E-ink display
donutbrew/primalscheme
donutbrew/ProblematicSites_SARS-CoV2
donutbrew/SARS-CoV-2_Sequencing
donutbrew/Schedule--SGELK
Perl module for scheduling tasks, with only using qsub/qstat/qdel. A very portable scheduler.
donutbrew/seqan
SeqAn's official repository.
donutbrew/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
donutbrew/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
donutbrew/spork-manager
Parallel process manager for bash. Yeah, it's not the best tool for the job, but when you have it...
donutbrew/spyne
donutbrew/SURPI-plus-dist
donutbrew/taxomias
an easy to use implementation of the NCBI taxonomy database for daily use
donutbrew/taxy
A simplified method for accessing NCBI Taxonomy locally, including accession names
donutbrew/themes
blink themes collection