Pinned Repositories
learn-genomics-in-linux
An interactive course on learning genomics/bioinformatics tasks in Linux.
aligndx
AlignDx platform for pathogen detection/surveillance from user-uploaded sequencing data and other data types
haploColor
Color a sequence alignment (nucleotide or protein) to visualize haplotype/recombination blocks
diffBase
diffBaseAnalyses
Code (data preparation and analysis) for diffBase
flagellinolysinDB
A database of flagellinolysin proteins identified from the NCBI and other databases
programming-tutorials-for-bioinformatics
A collection of introductory tutorials on programming basics for bioinformatics students
Abumazen-et-al
Code and data links for Abumazen et al.
domainfacts
Statistical detection of lineage, environment, and pathogen-association protein domain families
doxeylab-website
doxeylab's Repositories
doxeylab/learn-genomics-in-linux
An interactive course on learning genomics/bioinformatics tasks in Linux.
doxeylab/flagellinolysinDB
A database of flagellinolysin proteins identified from the NCBI and other databases
doxeylab/aligndx
AlignDx platform for pathogen detection/surveillance from user-uploaded sequencing data and other data types
doxeylab/Abumazen-et-al
Code and data links for Abumazen et al.
doxeylab/doxeylab-website
doxeylab/lab-website-template
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
doxeylab/programming-tutorials-for-bioinformatics
A collection of introductory tutorials on programming basics for bioinformatics students
doxeylab/micromeda-workflow
An overview of how to generate Micromeda files and upload then to Micromeda-Server.
doxeylab/domainfacts
Statistical detection of lineage, environment, and pathogen-association protein domain families
doxeylab/phylocorrelate
doxeylab/diffBase
doxeylab/haploColor
Color a sequence alignment (nucleotide or protein) to visualize haplotype/recombination blocks
doxeylab/diffBaseAnalyses
Code (data preparation and analysis) for diffBase
doxeylab/mimicme
mimicme: prediction of host-like proteins in pathogen genomes
doxeylab/LCTanalysis
Source code and data for analyses/plots described in Orrell et al. (forthcoming)
doxeylab/genomeAnnotationCoverage
Supplementary Data Files for Lobb et al. (forthcoming)
doxeylab/labScripts
Random collection of useful bioinformatics scripts/workflows
doxeylab/metannotateScripts
Additional post-processing scripts for metagenome analyses using metannotate
doxeylab/evoclust3d
Code and data for analyses in Adams et al. "Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function" (Bioinformatics, 2017, DOI: 10.1093/bioinformatics/btw815)