dpcook
Scientist, Cancer Therapeutics Program, Ottawa Hospital Research Institute Assistant professor, Department of Cellular and Molecular Medicine, uOttawa
Toronto, Canada
Pinned Repositories
code_snippets
emp_programs
Code used in the manuscript "Transcriptional census of epithelial-mesenchymal plasticity in cancer"
emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
fun_analysis
Exploration of various data sets
scrna_seq_workshop_2018
Analysis notebooks for the scRNA-Seq tutorials of the 2018 Stem Cell Network RNA-Seq workshops
scrna_seq_workshop_2020
All data and notebook for my 2020 scRNA-seq analysis workshop
scRNASeq-estrogen
Analysis scripts for Vuong & Cook et al. (2018)
spatial_benchmark
Code to reproduce analysis from Cook et al., bioRxiv, 2023
tcga_breast_cancer
Analysis for collaboration with the Sabourin lab, looking at breast cancer subtypes and molecular markers
thebaud_lung_BPD
R Notebooks for Hurskainen & Mizikova et al., 2020
dpcook's Repositories
dpcook/emt_dynamics
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
dpcook/scrna_seq_workshop_2020
All data and notebook for my 2020 scRNA-seq analysis workshop
dpcook/thebaud_lung_BPD
R Notebooks for Hurskainen & Mizikova et al., 2020
dpcook/code_snippets
dpcook/fun_analysis
Exploration of various data sets
dpcook/emp_programs
Code used in the manuscript "Transcriptional census of epithelial-mesenchymal plasticity in cancer"
dpcook/tcga_breast_cancer
Analysis for collaboration with the Sabourin lab, looking at breast cancer subtypes and molecular markers
dpcook/scRNASeq-estrogen
Analysis scripts for Vuong & Cook et al. (2018)
dpcook/scrna_seq_workshop_2018
Analysis notebooks for the scRNA-Seq tutorials of the 2018 Stem Cell Network RNA-Seq workshops
dpcook/spatial_benchmark
Code to reproduce analysis from Cook et al., bioRxiv, 2023
dpcook/cv
Repo containing code for my CV
dpcook/scrna_seq_workshop_2021
Notebooks used for my 2021 workshop on introductory scRNA-seq analysis
dpcook/dpcook.github.io
dpcook/logseq-hugo-template
dpcook/ose_stemness
Analysis code associated with Carter & Cook et al., 2020
dpcook/rna_seq_ovcan
Code for Cook et al., Communications Biology, 2023
dpcook/scATAC_workshop_2023
Code for the Stem Cell Network scATAC-seq workshop (2023)
dpcook/scrna_seq_workshop_2019
dpcook/scrna_seq_workshop_2023
Code for Stem Cell Network scRNA-seq analysis workshop 2023
dpcook/vector_models
vector graphics - feel free to use