dputhier/libgtftk

Issues

• get_sequence and chromosome name

  #99 opened 3 years ago by dputhier
  1

• del_attributes returns null or segfault when trying to delete all keys

  #98 opened 5 years ago by dputhier
  1

• pointer being freed was not allocated

  #97 opened 6 years ago by dputhier
  1

• blast_reader.c: L139

  #96 opened 6 years ago by dputhier
  4

• print_bed() and hsearch_r

  #95 opened 6 years ago by dputhier
  3

• del_attr test no more working and passing tests

  #94 opened 6 years ago by dputhier
  2

• Segfault when accessing keys

  #93 opened 6 years ago by dputhier
  0

• get_type

  #92 opened 6 years ago by fafa13
  0

• get_sequence. Problem with rev-comp (critical...). Sequence truncated.

  #89 opened 6 years ago by dputhier
  7

• get_sequence

  #90 opened 6 years ago by dputhier
  9

• Add an arg to print to delete 'chr'

  #88 opened 6 years ago by dputhier
  0

• Add an arg to print_gtf to convert (chr)MT to (chr)M...

  #87 opened 6 years ago by dputhier
  0

• select_trancript (select_most_5p_tx) is not returning the most 5' tx

  #80 opened 6 years ago by dputhier
  21

• Some issues encountered using a docker env

  #83 opened 6 years ago by dputhier
  3

• Warnings upon compilation

  #85 opened 6 years ago by dputhier
  2

• Warning during installation under docker image

  #86 opened 6 years ago by dputhier
  2

• Question regarding select_by_key

  #71 opened 6 years ago by dputhier
  4

• Various warnings and duplicate symbols

  #84 opened 6 years ago by dputhier
  6

• Sorting of gtf is not the same on all systems

  #82 opened 6 years ago by dputhier
  1

• blast2gtf

  #81 opened 6 years ago by fafa13
  1

• Issue with libgtftk.get_sequences (this one looks simple)

  #74 opened 6 years ago by dputhier
  1

• select_transcript() def to be deleted from header

  #77 opened 6 years ago by dputhier
  1

• minor issue in add_exon_number

  #79 opened 6 years ago by dputhier
  0

• Problem with invert_match and select_by_key

  #78 opened 6 years ago by dputhier
  0

• GTF_DATA is lost when a GTF object is removed from memory

  #76 opened 6 years ago by fafa13
  0

• Problem with empty results

  #75 opened 6 years ago by dputhier
  0

• size =

  #70 opened 6 years ago by dputhier
  3

• Pointer being freed was not allocated

  #73 opened 6 years ago by dputhier
  7

• merge_attr

  #72 opened 6 years ago by dputhier
  3

• Issue with select_by_positions

  #69 opened 6 years ago by dputhier
  1

• Select_by_key segfault with ensembl GTF

  #63 opened 6 years ago by dputhier
  18

• get_feature_list

  #53 opened 6 years ago by dputhier
  3

• Delete a print in select_by_loc

  #59 opened 7 years ago by dputhier
  0

• Some warnings upon installation

  #68 opened 7 years ago by dputhier
  1

• Convert_ensembl

  #67 opened 7 years ago by dputhier
  4

• get_sequences Segmentation fault

  #60 opened 7 years ago by dputhier
  0

• select_by_key and invert_match

  #50 opened 7 years ago by dputhier
  0

• Processing time in add_attr

  #58 opened 7 years ago by dputhier
  1

• Issue with select_by_key and invert_match=True

  #62 opened 7 years ago by dputhier
  2

• select_most_5p_tx_1 bug (call to select_transcript(GTF_DATA *gtf_data, 3)

  #64 opened 7 years ago by dputhier
  1

• convert_ensembl gives erratic results

  #65 opened 7 years ago by dputhier
  1

• select_transcript(self._data, 1) has became erratic since last push

  #66 opened 7 years ago by dputhier
  3

• select_by_numeric_value segfault in examples

  #61 opened 7 years ago by dputhier
  1

• convert_ensembl very slow on MAC

  #57 opened 7 years ago by dputhier
  10

• First develop_3.3 version

  #49 opened 7 years ago by fafa13
  11

• select_by_key segfault with 3.3

  #54 opened 7 years ago by dputhier
  15

• merge_attr.c improvements

  #55 opened 7 years ago by dputhier
  1

• select_by_key output is unstable

  #56 opened 7 years ago by dputhier
  1

• add_prefix/suffix

  #51 opened 7 years ago by dputhier
  18

• extract_data uniq argument

  #52 opened 7 years ago by dputhier
  2