PhyloSuite
PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. It combines the functions of two previous tools: MitoTool (https://github.com/dongzhang0725/MitoTool) and BioSuite (https://github.com/dongzhang0725/BioSuite).
Installation
The installer of all platforms can be downloaded from https://github.com/dongzhang0725/PhyloSuite/releases.
Windows
Windows 7, 8 and 10 are supported, just double click the PhyloSuite_xxx_win_setup.exe
to install, and run “PhyloSuite.exe” file after the installation.
Mac OSX & Linux
Unzip PhyloSuite_xxx_Mac.zip/PhyloSuite_xxx_Linux.tar.gz
to anywhere you like, and double click “PhyloSuite” (in PhyloSuite folder) to start, or use the following command:
cd path/to/PhyloSuite
./PhyloSuite
If you encounter an error of "permission denied", try to use the following command:
chmod -R 755 path/to/PhyloSuite(folder)
Note that both 64 bit and 32 bit Windows and Mac OSX versions are supported, whereas only 64 bit has been tested in Linux (ubuntu).
Examples
https://github.com/dongzhang0725/PhyloSuite/tree/master/example
Bug report
https://github.com/dongzhang0725/PhyloSuite/issues or send email to dongzhang0725@gmail.com.
Citation
Zhang, D., Gao, F., Li, W.X., Jakovlić, I., Zou, H., Zhang, J., and Wang, G.T. (2018). PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. bioRxiv, doi: 10.1101/489088. (Download as: RIS XML ENW)