Pinned Repositories
ALE
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
ALE-ng
A new version of ALE
bioinformatika
Repository for Bioinformatics course at ELTE held by Balint Varga
cat-pmsf-paper
CAT-PMSF paper data, scripts and results
dictyostelium-camp
evolgenom
IT Documentation website of the MTA-ELTE "Momentum" Evolutionary Genomics Research Group
mcmc-date
Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.
numerical-python-book-code
phyloslurm
Scripts to do phylogenetic magic on clusters using Slurm job scheduler
protein-language-challenge
Copenhagen Bioinformatics Hackathon 2021 Protein Edition - Protein Language Challenge
drenal's Repositories
drenal/cat-pmsf-paper
CAT-PMSF paper data, scripts and results
drenal/ALE
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
drenal/ALE-ng
A new version of ALE
drenal/bioinformatika
Repository for Bioinformatics course at ELTE held by Balint Varga
drenal/dictyostelium-camp
drenal/evolgenom
IT Documentation website of the MTA-ELTE "Momentum" Evolutionary Genomics Research Group
drenal/mcmc-date
Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.
drenal/numerical-python-book-code
drenal/phyloslurm
Scripts to do phylogenetic magic on clusters using Slurm job scheduler
drenal/protein-language-challenge
Copenhagen Bioinformatics Hackathon 2021 Protein Edition - Protein Language Challenge
drenal/scientific-python-lectures
Lectures on scientific computing with python, as IPython notebooks.
drenal/sddm-deepin
Deepin style SDDM theme.
drenal/sequence-busters
The 5 people team Sequence Buster's repository for Copenhagen Bioinformatics Hackathon 2021 Protein Edition
drenal/statfiz-gyak
Statisztikus Fizika Gyakorlat jegyzet