Drost Laboratory - Digital Biology Research Group

edgynode

Statistical assessment and simulated evolution of gene regulatory networks

metablastr

Seamless Integration of BLAST Sequence Searches in R

myTAI

Evolutionary Transcriptomics with R

network-inference-pipeline

Applying network-inference-toolbox to RNAseq data

orthologr

Genome wide orthology inference and dNdS estimation

philentropy

Information Theory and Distance Quantification with R

published_phylomaps

A Collection of Published Phylostratigraphic Maps and Divergence Maps

rdiamond

Running DIAMOND2 through R

retrocombinator

An R/C++ package for simulating the evolution of retrotransposons over time.

seqstats

Biological Sequence Statistics in R

drostlab/philentropy

Information Theory and Distance Quantification with R

drostlab/orthologr

Genome wide orthology inference and dNdS estimation

drostlab/myTAI

Evolutionary Transcriptomics with R

drostlab/metablastr

Seamless Integration of BLAST Sequence Searches in R

drostlab/published_phylomaps

A Collection of Published Phylostratigraphic Maps and Divergence Maps

drostlab/rdiamond

Running DIAMOND2 through R

drostlab/edgynode

Statistical assessment and simulated evolution of gene regulatory networks

drostlab/retrocombinator

An R/C++ package for simulating the evolution of retrotransposons over time.

drostlab/network-inference-pipeline

Applying network-inference-toolbox to RNAseq data

drostlab/seqstats

Biological Sequence Statistics in R

drostlab/homologr

Homology inference across multiple species

drostlab/network-inference-toolbox

A bunch of network inference utilities packaged as Singularity containers

drostlab/patternseqr

Sequence feature detection and classification with R

drostlab/gatai

drostlab/setga

Small library extracting a minimal subset from a given set that optimizes a given (set of) function(s).

drostlab/biodbretrievr

Retrieve and efficiently index entire biological sequence databases

drostlab/biomartr

Genomic Data Retrieval with R

drostlab/deepclust_colabfold

Using the DeepClust Database with ColabFold

drostlab/deepclust_dataretrieval

Cluster Extraction for the DeepClust Database

drostlab/diamond

Accelerated BLAST compatible local sequence aligner.

drostlab/hitparsr

Distributed Databasing of Alignment Hit Data

drostlab/shinyDIAMOND

A web interface to DIAMOND2

drostlab/uberblast

Seamless Integration of BLAST Alignments in R