drtamermansour/nu-ngs01

NGS-1 Data analysis course

NGS Data analysis course-1

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Lectures

Day 1

1. Part 1 | Next generation sequencing Techniques [Canvas]
2. Part 2 | BASH [Lectures]

Day 2

1. Part 1 | Seqencing file formats
2. Part 2 | FASTQC
3. Part 3 | Error trimming
4. Part 4 | Fastq exploration and seqkit_examples

Day 3

1. Part 1 | Sequence Alignment [Canvas]
2. Part 2 | Tutorial of Sequence Alignment
3. Part 3 | Git

Day 4

1. Part 1 | Algorithms for de novo assembly [Canvas]
2. Part 2 | Tutorial of de novo assembly
3. Part 3 | Assembly Quality Assessment

Day 5

1. Part 1 | Reference based assembly [Canvas]
2. Part 2 | Tutorial of Reference based assembly
3. Part 3 | functional annotation of Transcriptome assemply

Day 6

1. Part 1 | Differential expression
2. Part 2 | Assignment