drtconway
Jack of all trades computer scientist, bioinformatician. Generally making it all up as I go along, writing tools to support DNA sequencing applications.
Pinned Repositories
afplot
generate allele frequency plots
algorithms-js
Useful algorithms and associated data structures in Javascript/Typescript
asnone
ASN.1 Library
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
barc
Make sheets of barcode labels
dockanomics
A respository of docker images for bioinformatics
pedigree-tools-js
Javascript/Typescript tools for working with pedigrees
permutation-rs
A Rust library for creating random access permutations.
pykmer
A pure python toolkit for k-mer manipulation
scindo
A fast allele specific expression calculator
drtconway's Repositories
drtconway/permutation-rs
A Rust library for creating random access permutations.
drtconway/pedigree-tools-js
Javascript/Typescript tools for working with pedigrees
drtconway/scindo
A fast allele specific expression calculator
drtconway/algorithms-js
Useful algorithms and associated data structures in Javascript/Typescript
drtconway/asnone
ASN.1 Library
drtconway/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
drtconway/dasbox
Data Asset Transfer Box
drtconway/DefinitelyTyped
The repository for high quality TypeScript type definitions.
drtconway/FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
drtconway/Jasmine
Jasmine: SV Merging Across Samples
drtconway/kmers-rs
drtconway/lohator
Search for genomic regions exhibiting loss of heterozygosity
drtconway/long-read-plotting
A tool for plotting long read alignments
drtconway/mazab
A tool for converting BAM files back into FASTQ while respecting paired ends
drtconway/noodles
Bioinformatics I/O libraries in Rust
drtconway/peg-ts
Parsing Expression Grammar library for typescript
drtconway/psi-core-js
Private Set Intersection tooling in Typescript/Javascript
drtconway/psi-onik
drtconway/ransel
Rust library for succinct ranks/select data structures.
drtconway/readSlicer
Extract slices of reads from BAM files
drtconway/remark-mcr
remark plugin for laying out modernist cuisine style recipes
drtconway/squishy
Filter BAM files to remove doubly soft-clipped reads.
drtconway/stabby
interval stabbing in rust
drtconway/strobealign
Aligns short reads using dynamic seed size with strobemers
drtconway/unionfind-js
Disjoint Set data structure for Javascript/Typescript
drtconway/vcf-curator
drtconway/vue-plot
drtconway/warpy
A port of the core elements of the nf-core/wf-human-variation nanopore pipeline to bpipe
drtconway/xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
drtconway/ytea
Detection of mobile element insertions