druckmann-lab/EntericNervousSystemAnalysis

EntericNervousSystemAnalysis

Demo

Ryan's Data:

• The analysis of this dataset includes:
  • Conditional intensity function analysis
• Please refer to the Jupyter Notebook demo-20210316.ipynb.

Lori's Data:

• The analysis of this dataset includes:
  • Conditional intensity function analysis
  • Analysis of spatial structure and deviation from complete spatial randomness
• Please refer to the Jupyter Notebook demo20210524-newDataAndSpatialRandomnessComparison.ipynb.

Data

• Save all the csv files in the data directory.
• The default paths are ../Data/first for Ryan's data, and ../Data/stripe_development_20210517 for Lori's data. You may change them in .ipynb files.