Pinned Repositories
16S-demultiplexing
ABruijn
Long read assembly via A-Bruijn graph
CanSNPer
A hierarchical genotype classifier of clonal pathogens
family-based-smoothed-FPCA
Gravitropism-plot
Script to plot gravitropism data
hsph-scripts
Small useful scripts
openlabbook
snippy
:scissors: :zap: Rapid bacterial SNP calling and core genome alignments
spectrassembler
Tool (experimental) to compute layout from overlaps with spectral algorithm
wgs2ncbi
Toolkit for preparing genomes for submission to NCBI
druvus's Repositories
druvus/hsph-scripts
Small useful scripts
druvus/openlabbook
druvus/16S-demultiplexing
druvus/family-based-smoothed-FPCA
druvus/allbiotc2
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio
druvus/amplicon-classifier
Handling CanSNP based classification of custom marker sets
druvus/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
druvus/bgt
Flexible genotype query among 30,000+ samples whole-genome
druvus/bpipe-scripts
This repository contains the various bpipe scripts to handle NGS data.
druvus/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
druvus/Colocalisation
Script to calculate colocalisation of microscope data
druvus/DAZZ_DB
The Dazzler Data Base
druvus/londoncalling2016
Supplementary information for London Calling 2016
druvus/LS-BSR
Large scale Blast Score Ratio (BSR) analysis
druvus/methylKit
R package for DNA methylation analysis
druvus/nanopolish
Signal-level algorithms for MinION data
druvus/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
druvus/rat-gut
druvus/samscripts
druvus/Scripts
Scripts and pipelines
druvus/snp-frequency
druvus/tcga-snp-summary