drvenki
Bioinformatics developer. Shell, Python, R, AWS, Spark, Singularity, Docker.
Karolinska InstitutetSolna, Sweden
Pinned Repositories
5pillars
Five pillars of computational reproducibility
autoseq
autoseq-doc
Documentation for autoseq pipelines and dependencies
autoseq-scripts
Helper scripts for autoseq
bioinformatics-open-course
:microscope: Path to a free self-taught education in Bioinformatics!
Clinical-Cancer-Genomics-Course
gatk3-4-rnaseq-germline-snps-indels
Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
gatk_basic
A very simple and basic shell script to run GATK best practice pipeline
GFFtoolkit
Extracts information from GFF and prepare them in bed format
probiowebpage
Web page files for Probio
drvenki's Repositories
drvenki/gatk_basic
A very simple and basic shell script to run GATK best practice pipeline
drvenki/5pillars
Five pillars of computational reproducibility
drvenki/autoseq
drvenki/autoseq-doc
Documentation for autoseq pipelines and dependencies
drvenki/autoseq-scripts
Helper scripts for autoseq
drvenki/bioinformatics-open-course
:microscope: Path to a free self-taught education in Bioinformatics!
drvenki/Clinical-Cancer-Genomics-Course
drvenki/gatk3-4-rnaseq-germline-snps-indels
Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
drvenki/GFFtoolkit
Extracts information from GFF and prepare them in bed format
drvenki/probiowebpage
Web page files for Probio
drvenki/ProVision
Shiny app for proteomics data analysis
drvenki/python-cheatsheet
Comprehensive Python Cheatsheet
drvenki/reportgen
drvenki/SFG
The Simple Fool's Guide to population genomics using RNA-Seq
drvenki/sketch-threejs
Interactive sketches made with three.js.
drvenki/SparkGC
Spark Based Genome Compression for Large Collections of Genomes
drvenki/Spring-data-compression
FASTQ compression
drvenki/sv-cfdna
Structural Variants in cell-free tumor DNA
drvenki/svcaller
A structural variant caller
drvenki/svcompare
drvenki/VCFmerge
A package to merge somatic variants from multiple sources
drvenki/yapf
A formatter for Python files