dscheah
PhD Candidate in Microbial Ecology and Geochemistry at Curtin University
Western Australian Organic & Isotope Geochemistry Centre (WA-OIGC), Curtin UniversityPerth, Australia
dscheah's Stars
microsud/Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
EmilHvitfeldt/r-color-palettes
Comprehensive list of color palettes available in R โค๏ธ๐งก๐๐๐๐
wsargent/docker-cheat-sheet
Docker Cheat Sheet
vegandevs/vegan
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
joey711/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
tidyverse/ggplot2
An implementation of the Grammar of Graphics in R
kevinblighe/EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Ecogenomics/CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Ecogenomics/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
atom/atom
:atom: The hackable text editor
metagenome-atlas/atlas
ATLAS - Three commands to start analyzing your metagenome data
mixOmicsTeam/mixOmics
Development repository for the Bioconductor package 'mixOmics '
jtamames/SqueezeMeta
A complete pipeline for metagenomic analysis
conda/conda
A system-level, binary package and environment manager running on all major operating systems and platforms.