dscheah

dscheah's Stars

• microsud/Tools-Microbiome-Analysis

  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

  Language:CSS10946

• EmilHvitfeldt/r-color-palettes

  Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

  Language:R1.5k139

• wsargent/docker-cheat-sheet

  Docker Cheat Sheet

  22.1k4.7k

• vegandevs/vegan

  R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

  Language:R45298

• joey711/phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R584187

• tidyverse/ggplot2

  An implementation of the Grammar of Graphics in R

  Language:R6.5k2k

• kevinblighe/EnhancedVolcano

  Publication-ready volcano plots with enhanced colouring and labeling

  Language:R40981

• Ecogenomics/CheckM

  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

  Language:Python34473

• Ecogenomics/GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  Language:Python47682

• atom/atom

  :atom: The hackable text editor

  Language:JavaScript60.2k17.4k

• metagenome-atlas/atlas

  ATLAS - Three commands to start analyzing your metagenome data

  Language:Python37698

• mixOmicsTeam/mixOmics

  Development repository for the Bioconductor package 'mixOmics '

  Language:R15952

• jtamames/SqueezeMeta

  A complete pipeline for metagenomic analysis

  Language:C37980

• conda/conda

  A system-level, binary package and environment manager running on all major operating systems and platforms.

  Language:Python6.4k1.7k