dschles

dschles's Stars

• kensung-lab/INSurVeyor

  An insertion caller for Illumina paired-end WGS data.

  Language:C++212

• dellytools/delly

  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

  Language:C++427136

• Illumina/manta

  Structural variant and indel caller for mapped sequencing data

  Language:C++399153

• Future-House/paper-qa

  High accuracy RAG for answering questions from scientific documents with citations

  Language:Python5.5k520

• freeseek/mocha

  MOsaic CHromosomal Alterations (MoChA) caller

  Language:C7922

• yugabyte/yugabyte-db

  YugabyteDB - the cloud native distributed SQL database for mission-critical applications.

  Language:C8.9k1.1k

• black-forest-labs/flux

  Official inference repo for FLUX.1 models

  Language:Python13.7k969

• microsoft/Trace

  Trace, the New AutoDiff for AI Systems and LLM Agents

  Language:Python25513

• kcleal/gw

  Genome browser and variant annotation

  Language:C++2577

• karpathy/LLM101n

  LLM101n: Let's build a Storyteller

  28.3k1.5k

• jml-bioinfo/FindDNAFusion

  FindDNAFusion is a combinatorial pipeline for the detecton of cancer-associated gene fusions in next-generation DNA sequencing data.

  Language:R52

• vsbuffalo/granges

  A Rust library and command line tool for working with genomic ranges and their data.

  Language:Rust935

• jeroenjanssens/python-polars-the-definitive-guide

  Scripts and datasets for the O'Reilly book Python Polars: The Definitive Guide

  Language:Jupyter Notebook725

• zaeleus/noodles

  Bioinformatics I/O libraries in Rust

  Language:Rust48252

• xd009642/tarpaulin

  A code coverage tool for Rust projects

  Language:Rust2.5k175

• Minimap2onGPU/mm2-gb

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C165

• Lightning-AI/lightning-thunder

  Make PyTorch models up to 40% faster! Thunder is a source to source compiler for PyTorch. It enables using different hardware executors at once; across one or thousands of GPUs.

  Language:Python1.1k70

• posit-dev/great-tables

  Make awesome display tables using Python.

  Language:Python1.8k56

• skovaka/uncalled4

  Language:Python434

• HFQR/xitca-web

  Language:Rust71343

• Xudong-Huang/may_minihttp

  mini http implemented on top of may

  Language:Rust57639

• open2c/bioframe

  Genomic interval operations on Pandas DataFrames

  Language:Python17128

• broadinstitute/eMERGE-implemented-PRS-models-Lennon-et-al

  2

• treangenlab/methphaser

  MethPhaser: methylation-based haplotype phasing of human genomes

  Language:Python42

• vahidAK/SNVoter

  Improving SNV calling from Nanopore Sequencing

  Language:Python8

• ajeetdsouza/zoxide

  A smarter cd command. Supports all major shells.

  Language:Rust21.7k528

• jackh726/bigtools

  A high-performance BigWig and BigBed library in Rust

  Language:Rust655

• ratatui/ratatui

  A Rust crate for cooking up terminal user interfaces (TUIs) 👨‍🍳🐀 https://ratatui.rs

  Language:Rust9.9k302

• Psy-Fer/blue-crab

  crab go snap snap

  Language:Python282

• jbethune/rust-twobit

  2bit file format implementation in Rust

  Language:Rust71