This package of modules integrates GMOD JBrowse into your Tripal site providing
- Tripal page integration via Tripal JBrowse Page and
- a user interface for JBrowse instance creation and management via Tripal JBrowse Management.
This powerful combination allows you to provide seamless genome browsing to your users in an administrator-friendly manner.
- Download and install JBrowse in a web accessible location (e.g.
DRUPAL_ROOT/tools/jbrowse). - Download and unpack this package in your Drupal modules directory (i.e
sites/all/modules). - Enable "Tripal JBrowse Management" submodule through
http://[your site]/admin/modules. - Create a JBrowse instance for your species of interest using the Admin > Tripal > Tripal JBrowse Management user interface.
- Enable "Tripal-JBrowse Page Integration" submodule through
http://[your site]/admin/modules. - Embedded versions will be created for all your instances created in step 4.
Please visit our online documentation to learn more about installation, usage and features.
This module is open-source and licensed under GPLv3. Read full license.
Authors:
- Lacey-Anne Sanderson (@laceysanderson)
- Abdullah Almsaeed (@almasaeed2010)
- Joe West (@jwest60)
- Other contributors (https://github.com/tripal/tripal_jbrowse/graphs/contributors)
Copyright 2018 University of Saskatchewan and University of Tennessee Knoxville.
Citation:
Lacey-Anne Sanderson, Abdullah Almsaeed, Joe West, & Yichao Shen. (2019). tripal/tripal_jbrowse: Tripal JBrowse 3.0 (Version 7.x-3.0). Zenodo. http://doi.org/10.5281/zenodo.3564724.