Error message parsing Fasta file

[gouthamatla]

One bug I noticed recently was, if the sequence name in reference fasta is something like ** >chr1 length=xxxx ** , tophat places it as chr1 in the bam file, but spanki is trying to look for entire name instead of trimmed name.

[dsturg]

Thanks! That seems like something that wouldn't be too hard to fix.

On Sat, Apr 4, 2015 at 12:13 PM, Goutham notifications@github.com wrote:

One bug I noticed recently was, if the sequence name in reference fasta is
something like ** >chr1 length=xxxx ** , tophat places it as chr1 in
the bam file, but spanki is trying to look for entire name instead of
trimmed name.

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