Repository for scripts used for analysing next generation sequencing data organised by technique.
List of rRNA loci for removal prior to DEG calling.
Download TAIR10 gff and produce annotation files
FASTA file containing illumina adapter sequences for scythe step in RNA-seq alignment.
Build annotation files based on araport11 gff.
Calculate average depth using samtools depth on sorted BAM file.
Set of commands (bash & R) to take TAIR GFF files and produce annotation files, here specifically making a annotation file of genes in tandem orientation.