Pinned Repositories
AIV_seeker
AIV_seeker is optimized for detecting and identification of Avian Influenza Virus from metagenomics data.
Algorithms
This repository contains basic computer algorithms and some optimization codes for various programming challenges.
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
assembly
Pipelines for assembling NGS data from Seattle flu study.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-nanopore
A curated list of awesome nanopore analysis tools.
BaitFisher-package
The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:
Bio--Kmer
A perl module for kmer counting
sequdas
SeqUDAS: Sequence Upload and Data Archiving System
duanjunhyq's Repositories
duanjunhyq/AIV_seeker
AIV_seeker is optimized for detecting and identification of Avian Influenza Virus from metagenomics data.
duanjunhyq/awesome-nanopore
A curated list of awesome nanopore analysis tools.
duanjunhyq/CC_data_manager
duanjunhyq/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
duanjunhyq/cidgoh_ip_monitor
duanjunhyq/cidgoh_qc
Workflow for quality check for NGS data
duanjunhyq/ConFindr
Intra-species bacterial contamination detection
duanjunhyq/covizu
Rapid analysis and visualization of coronavirus genome variation
duanjunhyq/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
duanjunhyq/galaxy-client
Galaxy web api client library
duanjunhyq/ggfree
ggplot2-style plots with base R graphics
duanjunhyq/GreaterWMS
This Inventory management system is the currently Ford Asia Pacific after-sales logistics warehousing supply chain process . After I leave Ford , I start this project . In order to help some who need it . OneAPP Type . Support scanner PDA, mobile APP, desktop exe, website as well .
duanjunhyq/hello
Classic hello world script in Nextflow language
duanjunhyq/irida-docker
duanjunhyq/irida-galaxy-deploy
:whale: Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform
duanjunhyq/lexmapr_django
Django-powered interface for the LexMapr package.
duanjunhyq/mag
Assembly and binning of metagenomes
duanjunhyq/multi-package-containers
Testing building mulled containers for multi-requirement tools.
duanjunhyq/nanopore-transfer-automation
Performs archiving and transfer of Nanopore sequencing data
duanjunhyq/nextcloudsetup
duanjunhyq/pokay
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
duanjunhyq/ProbeTools
Flexible, user-friendly hybridization probe design for diverse viral taxa
duanjunhyq/puppet-magic_castle
Puppet Environment repo for Magic Castle - https://github.com/ComputeCanada/magic_castle
duanjunhyq/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
duanjunhyq/snakemake_demo
duanjunhyq/terraform_openstack_kenyi
Terraform deployment openstack cedar cloud
duanjunhyq/Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
duanjunhyq/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
duanjunhyq/workshop-mlbiostatistics
duanjunhyq/workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days