duopeng

GenoPrimer

Automated primer design for genotyping CRISPR edited cells

Organelle_IP_analyses_and_figures

Jupyter notebooks for analysis and figures related to the native organelle IP paper

protoSpaceJAM

CRISPR knock-in design at scale

Cas13a_guides_Influenza

Predict Cas13a guides for Influenza detection.

compile-gRNA-and-targets-for-EuPaGDT-batch-job-

image_merge-z-stack_and_stitch

Convert multiple z-stacks of different views into a single panoramic view with extended focus

JuncSeq

Extract splice junction sequences and make base-frequency plots

Large-gene-family-search-pipeline

oocystMeter

Perform oocyst segmentation in mercurochrome stained mosquito midgut

Recombination-detection-pipeline-for-large-gene-families

Automates detection of recombination events in large gene families (works with gene families with >1000 genes)

duopeng/JuncSeq

Extract splice junction sequences and make base-frequency plots

duopeng/oocystMeter

Perform oocyst segmentation in mercurochrome stained mosquito midgut

duopeng/image_merge-z-stack_and_stitch

Convert multiple z-stacks of different views into a single panoramic view with extended focus

duopeng/Recombination-detection-pipeline-for-large-gene-families

Automates detection of recombination events in large gene families (works with gene families with >1000 genes)

duopeng/Large-gene-family-search-pipeline

duopeng/Cas13a_guides_Influenza

Predict Cas13a guides for Influenza detection.

duopeng/compile-gRNA-and-targets-for-EuPaGDT-batch-job-

duopeng/get-flank-of-gRNA-target

duopeng/protoSpaceJAM-readthedocs

protoSpaceJAM readthedocs

duopeng/Shiny-gene-families

Visualize and cluster gene family members based on genetic distance

duopeng/CRISPResso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

duopeng/detectron2_customization

Customization of the detectron2 framework

duopeng/duopeng.github.io

duopeng/handy_Linux_shell_scripts

duopeng/mantelhaen.test

duopeng/readthedocs.org

The source code that powers readthedocs.org

duopeng/ShinyRNAseq

Shiny webapp for RNAseq analysis