dviraran/xCell

Issues

• Issues running xCell using the Charoentong signatures

  #90 opened 23 days ago by fhartley101
  1

• Gene Signatures Origin

  #89 opened a month ago by jcasadogp
  1

• Data from HTG

  #88 opened 3 months ago by jbague
  0

• cell.types.use | Valid values?

  #87 opened 4 months ago by shugamoe
  1

• Proteomics data, number of genes

  #83 opened 10 months ago by anuar-makhmut
  3

• Comparison between Website and R Tool Results

  #84 opened 8 months ago by littleeun
  5

• can xcell be used for mouse bulk seq data?

  #70 opened 2 years ago by zhuhonglin2022
  3

• meaning of score

  #82 opened 10 months ago by michela12345
  0

• Results form R are different respect online website

  #81 opened 10 months ago by michela12345
  6

• Error in processing xcell analysis

  #78 opened 10 months ago by tjer1ryom
  7

• loading issue

  #80 opened a year ago by Kiliankleemann
  4

• How to process duplicate gene_symbol

  #79 opened a year ago by littleeun
  4

• Low number of genes

  #77 opened a year ago by jbague
  2

• xCell enrichment score normalization

  #76 opened a year ago by Bart-Joosten
  0

• Query Regarding the Use of Custom Gene Signatures with `xCellAnalysis`

  #75 opened a year ago by drhmoosavi
  1

• Define new celltypes

  #74 opened a year ago by restore1997
  1

• Nanostring GeoMx

  #73 opened a year ago by RM83
  1

• Minimum number of genes required

  #72 opened 2 years ago by liscruk
  1

• xCell for proteomics?

  #71 opened 2 years ago by fabiostrindade
  2

• Use alterantive training dataset

  #58 opened 3 years ago by ngualand
  2

• Gene Matrix Normalizatoin

  #69 opened 2 years ago by tdfy
  0

• "aDC" Activated Dendritic Cell?

  #68 opened 2 years ago by tdfy
  2

• xCellSignifcanceBetaDist intrepretation

  #67 opened 2 years ago by Shubhra1994
  3

• cell signatures

  #66 opened 2 years ago by LuisCanoA
  0

• Different results between online analysis and R software

  #65 opened 2 years ago by YKH810325
  3

• xCell web server doesn't work

  #64 opened 2 years ago by YKH810325
  1

• How to combine duplicated gene names

  #62 opened 3 years ago by eajeong
  2

• Batch effect

  #63 opened 3 years ago by sfdycod
  1

• Regarding TCGA data

  #61 opened 3 years ago by dossantosgabrielarantes
  2

• hello there

  #60 opened 3 years ago by phjlsw
  0

• Is CPM matrix acceptable?

  #59 opened 3 years ago by Meijian
  3

• cDC annotation

  #57 opened 3 years ago by Morph0124
  2

• Use xCell signatures + custom ones for other cell types

  #56 opened 3 years ago by Lisa-Salhi
  2

• How do I see the gene names contained in each cell type?

  #55 opened 3 years ago by Gaodelike
  2

• Can't download the xCell analysis results

  #54 opened 4 years ago by Jokendo-collab
  0

• Loading the custom genes signature into xCell gives error

  #52 opened 4 years ago by kabanowa47
  0

• Macrophage annotation

  #53 opened 4 years ago by jiaren-zhang
  1

• What does the output mean?

  #48 opened 4 years ago by eudoraleer
  2

• Question regarding comparing enrichment scores for a cell type across samples

  #47 opened 4 years ago by cwang131
  2

• Batch effects in input data and reliability of applying xCell to non-human species

  #51 opened 4 years ago by cwang131
  2

• Docker image planned?

  #49 opened 4 years ago by sgosline
  2

• export gene X cell

  #50 opened 4 years ago by abehd1
  3

• Loading R package

  #46 opened 4 years ago by mooreann
  2

• Mentioning the _rnaseq_ parameter in the usage instruction

  #45 opened 4 years ago by ashipde
  0

• create release

  #44 opened 4 years ago by grst
  2

• Selecting only certain cell types

  #43 opened 4 years ago by EduardoGCCM
  4

• xCell analysis with low common gene

  #42 opened 4 years ago by XiaofeiSunUCSF
  1

• Score over 1

  #41 opened 4 years ago by pushtiks
  0

• genes used in the signature matrix

  #40 opened 4 years ago by lila167
  5

• Sample origin

  #38 opened 5 years ago by ikalatskaya
  2