dvitsios

JARVIS

JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes

mantis-ml-release

mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens

align-paths

Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering

codesignal-my-solutions

Solutions in Python from CodeSignal problems & Bots

custom-CRISPR-analysis-pipeline

CRISPR data analysis

Differential-expression-with-Chimira-and-R

Small RNA-Seq Differential Expression with Chimira, R and DESeq2

kmeans_pthreads

K-means clustering implementation using pthreads in C

mantis-ml-release-2.0

Mantis-ML 2.0

mirnovo

Genome free discovery and classification of miRNAs from small RNA-Seq with random forests

shortestPath_CUDA

Shortest Path problem solver using CUDA

dvitsios/codesignal-my-solutions

Solutions in Python from CodeSignal problems & Bots

dvitsios/mirnovo

Genome free discovery and classification of miRNAs from small RNA-Seq with random forests

dvitsios/shortestPath_CUDA

Shortest Path problem solver using CUDA

dvitsios/kmeans_pthreads

K-means clustering implementation using pthreads in C

dvitsios/align-paths

Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering

dvitsios/custom-CRISPR-analysis-pipeline

CRISPR data analysis

dvitsios/Differential-expression-with-Chimira-and-R

Small RNA-Seq Differential Expression with Chimira, R and DESeq2

dvitsios/gameOfLife_CUDA

Game of Life simulation using CUDA

dvitsios/genomics-factory

Various scripts and snippets for analysing genomic data

dvitsios/hackerrank-coding_challenges

Solutions in Python from 'Cracking the Coding Interview Challenges' on HackerRank

dvitsios/miratlas

A comprehensive atlas of miRNA expression & modifications in Human and Mouse

dvitsios/mirnovo-dnn-classifier

Small RNA prediction using deep neural nets (beta)

dvitsios/mirrna-mod-pipeline

miRNA modifications identification pipeline

dvitsios/pandora_robotics_team-gui

PANDORA Robotics Team - GUI (Aristotle U. of Thessaloniki)

dvitsios/python-snippets

Useful python code snippets

dvitsios/mantis-ml-release-2.0

Mantis-ML 2.0

dvitsios/benchmarking-tools

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

dvitsios/BioPAX.Viz

BioPAXViz is a Cytoscape (version 3.x) app providing a comprehensive framework for metabolic pathway visualization

dvitsios/Courses-and-Practicals

Repository for New Courses and Practicals

dvitsios/DanQ

A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences

dvitsios/deepcpg

Deep neural networks for predicting CpG methylation

dvitsios/DrugnomeAI-release

dvitsios/mantis-ml-predictions

Gene rankings across various disease areas by mantis-ml

dvitsios/mantis-ml-release

mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens

dvitsios/milton-release

MILTON: Disease prediction with biomarkers and augmented PheWAS analyses

dvitsios/mirnovo-predicted-miRNAs

Lists with predicted miRNAs by mirnovo

dvitsios/multiple-barcoded-seqs-demultiplexing

Assign CRISPR data into bins, given an amplicons set

dvitsios/python-for-data-analysis

An introduction to data science using Python and Pandas with Jupyter notebooks.

dvitsios/RNA-Seq-Biases-Detector

Detect sequencing biases from RNA-Seq data extracted from Illumina machines

dvitsios/SciChat-refactoring

SciChat: communication platform between scientists and the public