dvklopfenstein
2023 August: RIP Bram Moolenaar, vim creator "A core part of the Unix credo is that everything is a file – and specifically, in most cases, it's a text fille
Philadelphia, PA, USA
Pinned Repositories
ascii_plots
Convenience function for quick and dirty data analysis
biocode
Various Biology Links
enrichmentanalysis
Generic enrichment analysis
goatools_simulation
Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations
OMICS
Repo for students of the Advanced OMICS Course
pmidcite
Turbocharge a PubMed literature rather than clicking and clicking and clicking on Google Scholar
PrincetonAlgorithms
Python implementations of selected Princeton Java Algorithms and Clients by Robert Sedgewick and Kevin Wayne
ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
vim_git_etc
Common git workflows, vim & more
goatools
Python library to handle Gene Ontology (GO) terms
dvklopfenstein's Repositories
dvklopfenstein/PrincetonAlgorithms
Python implementations of selected Princeton Java Algorithms and Clients by Robert Sedgewick and Kevin Wayne
dvklopfenstein/pmidcite
Turbocharge a PubMed literature rather than clicking and clicking and clicking on Google Scholar
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
dvklopfenstein/goatools_simulation
Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations
dvklopfenstein/biocode
Various Biology Links
dvklopfenstein/vim_git_etc
Common git workflows, vim & more
dvklopfenstein/bamnostic
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
dvklopfenstein/cv_and_thesis
Curriculum Vitae and PhD thesis of D. V. Klopfenstein
dvklopfenstein/data_pa_gov
Work with the opendata from the Commonwealth of Pennsylvania
dvklopfenstein/genanki
A Python 3 library for generating Anki decks
dvklopfenstein/handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
dvklopfenstein/intervaltree
A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
dvklopfenstein/MIIM_517_Privacy_Policy
Privacy policy for biostatistics course, MIIM-517 at Drexel University
dvklopfenstein/nanocomp
Comparison of multiple long read datasets
dvklopfenstein/philly
dvklopfenstein/prtgitlog
Print 'git log' output in a concise and informative format
dvklopfenstein/pubs
Your bibliography on the command line
dvklopfenstein/work_w_raefcon
Working with raefcon
dvklopfenstein/OMICS
Repo for students of the Advanced OMICS Course
dvklopfenstein/FlowKit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
dvklopfenstein/goatools
Python library to handle Gene Ontology (GO) terms
dvklopfenstein/Hands-On-Data-Analysis-with-Pandas-2nd-edition
Materials for following along with Hands-On Data Analysis with Pandas – Second Edition
dvklopfenstein/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
dvklopfenstein/latex-nihbiosketch
A LaTeX class implementing the new NIH Biographical Sketch Format
dvklopfenstein/localGPT
Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.
dvklopfenstein/login-attempt-simulator
Simulation of regular login activity on a site and random activity from a hacker using a brute-force password guessing attack.
dvklopfenstein/ml-utils
Machine learning utility functions and classes.
dvklopfenstein/papermill
📚 Parameterize, execute, and analyze notebooks
dvklopfenstein/stock-analysis
Simple to use interfaces for basic technical analysis of stocks.
dvklopfenstein/univ_statistics
Notes and code for John Hopkins University Statistics Coursese