dvklopfenstein
2023 August: RIP Bram Moolenaar, vim creator "A core part of the Unix credo is that everything is a file – and specifically, in most cases, it's a text fille
Philadelphia, PA, USA
Pinned Repositories
biocode
Various Biology Links
enrichmentanalysis
Generic enrichment analysis
goatools_simulation
Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations
OMICS
Repo for students of the Advanced OMICS Course
pmidcite
Download "Cited by" data from the NIH for any paper with a PubMed ID
PrincetonAlgorithms
Python implementations of selected Princeton Java Algorithms and Clients by Robert Sedgewick and Kevin Wayne
ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
timetracker
Pandas-friendly time tracking from the CLI
vim_git_etc
Common git workflows, vim & more
goatools
Python library to handle Gene Ontology (GO) terms
dvklopfenstein's Repositories
dvklopfenstein/PrincetonAlgorithms
Python implementations of selected Princeton Java Algorithms and Clients by Robert Sedgewick and Kevin Wayne
dvklopfenstein/pmidcite
Download "Cited by" data from the NIH for any paper with a PubMed ID
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
dvklopfenstein/goatools_simulation
Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations
dvklopfenstein/biocode
Various Biology Links
dvklopfenstein/vim_git_etc
Common git workflows, vim & more
dvklopfenstein/bamnostic
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
dvklopfenstein/data_pa_gov
Work with the opendata from the Commonwealth of Pennsylvania
dvklopfenstein/genanki
A Python 3 library for generating Anki decks
dvklopfenstein/handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
dvklopfenstein/intervaltree
A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
dvklopfenstein/MIIM_517_Privacy_Policy
Privacy policy for biostatistics course, MIIM-517 at Drexel University
dvklopfenstein/prtgitlog
Print 'git log' output in a concise and informative format
dvklopfenstein/pubs
Your bibliography on the command line
dvklopfenstein/work_w_raefcon
Working with raefcon
dvklopfenstein/OMICS
Repo for students of the Advanced OMICS Course
dvklopfenstein/timetracker
Pandas-friendly time tracking from the CLI
dvklopfenstein/coinfection_viruses
dvklopfenstein/cookiecutter-pypackage
Cookiecutter template for a Python package.
dvklopfenstein/FlowKit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
dvklopfenstein/goatools
Python library to handle Gene Ontology (GO) terms
dvklopfenstein/Hands-On-Data-Analysis-with-Pandas-2nd-edition
Materials for following along with Hands-On Data Analysis with Pandas – Second Edition
dvklopfenstein/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
dvklopfenstein/latex-nihbiosketch
A LaTeX class implementing the new NIH Biographical Sketch Format
dvklopfenstein/localGPT
Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.
dvklopfenstein/login-attempt-simulator
Simulation of regular login activity on a site and random activity from a hacker using a brute-force password guessing attack.
dvklopfenstein/ml-utils
Machine learning utility functions and classes.
dvklopfenstein/papermill
📚 Parameterize, execute, and analyze notebooks
dvklopfenstein/stock-analysis
Simple to use interfaces for basic technical analysis of stocks.
dvklopfenstein/univ_statistics
Notes and code for John Hopkins University Statistics Coursese